Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   C9I47_RS14635 Genome accession   NZ_CP029843
Coordinates   3315346..3316404 (-) Length   352 a.a.
NCBI ID   WP_111267410.1    Uniprot ID   A0A508AUA9
Organism   Marilutibacter maris strain HZ9B     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3310346..3321404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9I47_RS14615 (C9I47_2693) - 3311375..3313321 (-) 1947 WP_111267406.1 type IV pilus secretin PilQ -
  C9I47_RS14620 (C9I47_2694) - 3313339..3313890 (-) 552 WP_223250162.1 pilus assembly protein PilP -
  C9I47_RS14625 (C9I47_2695) - 3313908..3314573 (-) 666 WP_111267408.1 type 4a pilus biogenesis protein PilO -
  C9I47_RS14630 (C9I47_2696) - 3314570..3315346 (-) 777 WP_111267409.1 PilN domain-containing protein -
  C9I47_RS14635 (C9I47_2697) pilM 3315346..3316404 (-) 1059 WP_111267410.1 pilus assembly protein PilM Machinery gene
  C9I47_RS14640 (C9I47_2698) - 3316643..3319129 (+) 2487 WP_111267411.1 penicillin-binding protein 1A -
  C9I47_RS14645 (C9I47_2699) - 3319326..3319991 (+) 666 WP_111267412.1 hypothetical protein -
  C9I47_RS14650 (C9I47_2700) - 3320160..3320618 (-) 459 WP_145985539.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37765.13 Da        Isoelectric Point: 4.4380

>NTDB_id=296285 C9I47_RS14635 WP_111267410.1 3315346..3316404(-) (pilM) [Marilutibacter maris strain HZ9B]
MGVITKSQPALVGVDISSTAVKLLQLSRSGNRYRVDHYAVEPLPPNAVIEKNLVEVEAVGEAIKRAVSRSGTRARHAAAA
VAGSSVITKVIPMQSDLDDDEMESAIELEAVNYVPYPIEEVNLDFEVLGPVPGNNETVQVLLAASRAENVEVRASALELG
GLIPKVMDVEAFAVENAFALIAEQLSGPRDGLVALIDAGATMTTLNVLRNGRSIYNREQVFGGKQLTDEVMRRYGLSYEE
AGLAKRQGGLPESYEVEVLEPFKEAMAQQVSRLLQFFYAGSEFNRVDQIVLAGGCASIQGIAQMVEEQLGVPTMVANPLA
NMTLGQRVQAHALAQDAPALMIACGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=296285 C9I47_RS14635 WP_111267410.1 3315346..3316404(-) (pilM) [Marilutibacter maris strain HZ9B]
GTGGGAGTCATCACAAAAAGCCAGCCGGCGCTCGTCGGCGTGGACATCAGTTCGACTGCCGTCAAGCTGCTGCAGCTGTC
GCGGTCGGGTAATCGCTATCGGGTCGACCACTATGCGGTCGAGCCGTTGCCGCCGAATGCGGTGATCGAGAAGAACCTTG
TCGAGGTCGAGGCCGTCGGCGAGGCGATCAAACGCGCGGTGTCCAGATCCGGGACCCGGGCCCGTCATGCCGCCGCCGCG
GTCGCGGGCTCGTCGGTGATCACCAAGGTGATCCCGATGCAGTCCGACCTGGACGACGACGAGATGGAGTCGGCCATCGA
GCTGGAGGCGGTCAACTACGTGCCGTATCCGATCGAGGAGGTGAACCTCGACTTCGAGGTCCTCGGGCCGGTGCCGGGCA
ACAACGAGACCGTGCAGGTGCTGCTGGCGGCGTCGCGTGCCGAGAACGTCGAGGTCCGCGCGTCCGCGCTGGAGCTGGGC
GGGCTGATTCCGAAGGTCATGGACGTGGAGGCGTTCGCGGTCGAGAACGCGTTCGCCCTGATCGCCGAGCAGCTCAGCGG
GCCGCGCGACGGCCTGGTGGCGCTGATCGACGCCGGCGCGACCATGACCACGCTCAACGTGCTGCGCAACGGACGCAGCA
TCTACAACCGCGAGCAGGTGTTCGGCGGCAAGCAGCTGACCGACGAGGTCATGCGCCGCTACGGCCTGAGCTACGAGGAG
GCCGGCCTGGCCAAGCGCCAGGGCGGGCTGCCGGAGAGCTACGAGGTCGAGGTCCTTGAGCCGTTCAAGGAGGCGATGGC
CCAGCAGGTCAGCCGTCTGCTGCAGTTCTTCTATGCCGGCAGCGAGTTCAACCGCGTCGACCAGATCGTGCTGGCCGGCG
GCTGCGCGTCGATCCAGGGCATCGCCCAGATGGTCGAAGAGCAGCTGGGTGTGCCGACGATGGTCGCCAACCCGCTCGCG
AACATGACCCTCGGCCAACGTGTCCAGGCCCACGCTCTGGCGCAGGACGCGCCGGCGCTGATGATCGCCTGCGGCCTCGC
ACTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A508AUA9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

50.72

98.58

0.5
  comM Acinetobacter nosocomialis M2

50.432

98.58

0.497
  comM Acinetobacter baylyi ADP1

49.28

98.58

0.486
  pilM Legionella pneumophila strain ERS1305867

44.915

100

0.452

Multiple sequence alignment