Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C9I47_RS04995 Genome accession   NZ_CP029843
Coordinates   1107172..1107669 (+) Length   165 a.a.
NCBI ID   WP_111265776.1    Uniprot ID   -
Organism   Marilutibacter maris strain HZ9B     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1102172..1112669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9I47_RS04975 (C9I47_0892) murL 1102207..1103598 (+) 1392 WP_111265772.1 UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-L- glutamate epimerase -
  C9I47_RS04980 (C9I47_0893) murD 1103579..1104997 (+) 1419 WP_111265773.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -
  C9I47_RS04985 (C9I47_0894) - 1105066..1105866 (+) 801 WP_111265774.1 dienelactone hydrolase family protein -
  C9I47_RS04990 (C9I47_0895) - 1105890..1106903 (-) 1014 WP_111265775.1 polyprenyl synthetase family protein -
  C9I47_RS04995 (C9I47_0896) ssb 1107172..1107669 (+) 498 WP_111265776.1 single-stranded DNA-binding protein Machinery gene
  C9I47_RS05000 (C9I47_0897) - 1107849..1108733 (-) 885 WP_111265777.1 STM4011 family radical SAM protein -
  C9I47_RS05005 (C9I47_0898) - 1108753..1110111 (-) 1359 WP_111265778.1 STM4012 family radical SAM protein -
  C9I47_RS05010 (C9I47_0899) - 1110108..1110929 (-) 822 WP_111265779.1 STM4013/SEN3800 family hydrolase -
  C9I47_RS05015 (C9I47_0900) - 1110922..1112037 (-) 1116 WP_111267969.1 STM4014 family protein -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18065.87 Da        Isoelectric Point: 5.3596

>NTDB_id=296277 C9I47_RS04995 WP_111265776.1 1107172..1107669(+) (ssb) [Marilutibacter maris strain HZ9B]
MARGINKVILVGNLGNDPDTKYTQGGMAVTRISLATTSVRKDRDGNTQERTEWHRVVFFGKLGEIAGEYLRKGSQVYVEG
SIRYDKYTGQDGVEKYSTDIIADEMQMLGGRGDGGGGGSRGEYRGGGNDRPQRAPARQEAQPRREAPPAKSNDFADDFAD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=296277 C9I47_RS04995 WP_111265776.1 1107172..1107669(+) (ssb) [Marilutibacter maris strain HZ9B]
ATGGCGCGTGGTATCAACAAGGTGATCCTGGTCGGCAACCTCGGCAACGACCCCGACACCAAATACACCCAGGGCGGCAT
GGCCGTGACCCGGATCAGCCTGGCCACCACCAGCGTGCGCAAGGACCGCGACGGCAATACCCAGGAGCGCACCGAATGGC
ACCGCGTGGTGTTCTTCGGCAAGCTCGGCGAGATCGCCGGCGAGTATCTGCGCAAGGGCAGCCAGGTCTATGTCGAGGGC
TCGATCCGCTACGACAAGTACACCGGCCAGGACGGCGTGGAGAAATACTCCACCGACATCATCGCCGACGAGATGCAGAT
GCTCGGCGGCCGTGGCGACGGCGGCGGTGGCGGTAGTCGTGGCGAGTACCGCGGTGGCGGCAACGACCGCCCGCAGCGCG
CGCCCGCCCGCCAGGAGGCGCAGCCGCGCCGCGAGGCCCCGCCGGCCAAGTCGAACGACTTCGCCGACGATTTCGCCGAC
GACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

46.067

100

0.497
  ssb Neisseria meningitidis MC58

44.828

100

0.473
  ssb Neisseria gonorrhoeae MS11

44.828

100

0.473
  ssb Glaesserella parasuis strain SC1401

40.741

100

0.467

Multiple sequence alignment