Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DM789_RS08600 Genome accession   NZ_CP029804
Coordinates   1742754..1743227 (-) Length   157 a.a.
NCBI ID   WP_003774356.1    Uniprot ID   A0AAU9VGH2
Organism   Erysipelothrix rhusiopathiae strain ML101     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1737754..1748227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DM789_RS08575 (DM789_08575) dnaB 1738078..1739448 (-) 1371 WP_003774361.1 replicative DNA helicase -
  DM789_RS08580 (DM789_08580) rplI 1739460..1739906 (-) 447 WP_013853429.1 50S ribosomal protein L9 -
  DM789_RS08585 (DM789_08585) - 1739908..1741863 (-) 1956 WP_003774359.1 DHH family phosphoesterase -
  DM789_RS08590 (DM789_08590) - 1741910..1742449 (-) 540 WP_013853430.1 DUF2232 domain-containing protein -
  DM789_RS08595 (DM789_08595) rpsR 1742503..1742736 (-) 234 WP_003774357.1 30S ribosomal protein S18 -
  DM789_RS08600 (DM789_08600) ssb 1742754..1743227 (-) 474 WP_003774356.1 single-stranded DNA-binding protein Machinery gene
  DM789_RS08605 (DM789_08605) rpsF 1743253..1743543 (-) 291 WP_003774354.1 30S ribosomal protein S6 -
  DM789_RS08610 (DM789_08610) - 1743683..1744321 (-) 639 WP_003774352.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  DM789_RS08615 (DM789_08615) - 1744383..1745234 (-) 852 WP_013853431.1 LysR family transcriptional regulator -
  DM789_RS08620 (DM789_08620) - 1745328..1745891 (+) 564 WP_003774349.1 chromate transporter -
  DM789_RS08625 (DM789_08625) - 1745875..1746414 (+) 540 WP_003774348.1 chromate transporter -
  DM789_RS08630 (DM789_08630) lysS 1746452..1747936 (-) 1485 WP_013853432.1 lysine--tRNA ligase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17584.36 Da        Isoelectric Point: 4.4023

>NTDB_id=296112 DM789_RS08600 WP_003774356.1 1742754..1743227(-) (ssb) [Erysipelothrix rhusiopathiae strain ML101]
MINRTILVGRLTRDPELRKTQTGKSVVSFTVACNRRFGQQDETDFINCVAWNQTADFMANYLLKGALVGLEGRIQSRSYE
DATGKRVYVQEVVVDTLQSLESRAQRQEQGASQGQYQNQNSNQGGSSYTPSYQADPEPSFSMDDEPVLDITSDDLPF

Nucleotide


Download         Length: 474 bp        

>NTDB_id=296112 DM789_RS08600 WP_003774356.1 1742754..1743227(-) (ssb) [Erysipelothrix rhusiopathiae strain ML101]
ATGATTAATCGCACTATATTAGTGGGTCGTTTAACTCGAGATCCAGAACTTCGTAAAACACAAACTGGTAAATCAGTCGT
TTCGTTTACTGTAGCGTGCAACCGCCGCTTTGGACAACAAGATGAAACTGATTTTATCAATTGTGTGGCTTGGAATCAAA
CAGCTGATTTTATGGCAAATTACTTACTAAAGGGTGCTTTAGTAGGTCTAGAAGGTCGAATTCAATCGAGATCATATGAA
GACGCTACCGGTAAACGTGTATATGTTCAAGAGGTTGTTGTGGATACACTTCAATCACTCGAATCACGCGCACAACGTCA
AGAACAAGGCGCAAGCCAAGGTCAATATCAGAATCAAAACAGTAATCAAGGTGGATCAAGTTATACACCTTCATACCAAG
CTGATCCTGAACCATCATTCTCAATGGATGATGAGCCCGTTCTCGATATAACCAGTGACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

45.882

100

0.497
  ssbA Bacillus subtilis subsp. subtilis str. 168

41.989

100

0.484
  ssb Neisseria meningitidis MC58

36.994

100

0.408
  ssb Neisseria gonorrhoeae MS11

33.526

100

0.369

Multiple sequence alignment