Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DM447_RS18130 Genome accession   NZ_CP029797
Coordinates   3713498..3713986 (-) Length   162 a.a.
NCBI ID   WP_112182583.1    Uniprot ID   -
Organism   Paraliobacillus zengyii strain X-1125     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3708498..3718986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DM447_RS18110 - 3708749..3710122 (+) 1374 WP_112182579.1 MATE family efflux transporter -
  DM447_RS18115 - 3710196..3710744 (-) 549 WP_112182580.1 GNAT family protein -
  DM447_RS18120 serA 3711071..3712657 (-) 1587 WP_112182581.1 phosphoglycerate dehydrogenase -
  DM447_RS18125 rpsR 3713240..3713470 (-) 231 WP_112182582.1 30S ribosomal protein S18 -
  DM447_RS18130 ssbA 3713498..3713986 (-) 489 WP_112182583.1 single-stranded DNA-binding protein Machinery gene
  DM447_RS18135 rpsF 3713999..3714289 (-) 291 WP_112182584.1 30S ribosomal protein S6 -
  DM447_RS18140 ychF 3714466..3715566 (-) 1101 WP_112182585.1 redox-regulated ATPase YchF -
  DM447_RS18145 - 3715831..3716028 (-) 198 WP_112182797.1 DUF951 domain-containing protein -
  DM447_RS18150 - 3716086..3717108 (-) 1023 WP_112182586.1 hypothetical protein -
  DM447_RS18155 yyaC 3717198..3717794 (+) 597 WP_112182587.1 spore protease YyaC -
  DM447_RS18160 - 3717838..3718548 (-) 711 WP_112182588.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17766.35 Da        Isoelectric Point: 4.4167

>NTDB_id=296084 DM447_RS18130 WP_112182583.1 3713498..3713986(-) (ssbA) [Paraliobacillus zengyii strain X-1125]
MLNRVVLVGRLTKDPDLRYTANGVAVANFTLAVNRPFSNQQGEREADFINCVVWRRPAENLANFMSKGSLVGVDGRVQTR
NFEGQDGKRVFVTEIVADSVQFLESKGSGGSNSQNSGQGMDGYNKAQDQNQSSNTNNSNQNESDPFKDNGEPIDISDDDL
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=296084 DM447_RS18130 WP_112182583.1 3713498..3713986(-) (ssbA) [Paraliobacillus zengyii strain X-1125]
ATGTTAAATCGTGTCGTACTTGTAGGCAGGTTAACGAAAGATCCAGACTTACGCTATACTGCAAATGGCGTTGCAGTAGC
TAATTTCACCTTAGCAGTCAATCGCCCGTTTTCAAACCAGCAAGGAGAAAGAGAAGCAGACTTTATCAACTGTGTCGTAT
GGAGACGTCCGGCAGAAAATTTGGCTAACTTTATGAGTAAAGGTAGTCTTGTGGGTGTTGATGGTCGTGTGCAAACTCGA
AACTTTGAAGGACAAGACGGAAAACGTGTATTTGTCACAGAAATTGTAGCAGATTCTGTTCAGTTTCTTGAGTCAAAAGG
TAGCGGAGGATCAAATTCACAGAATAGTGGACAAGGTATGGATGGGTATAATAAAGCTCAGGACCAAAACCAGTCGTCTA
ATACTAATAATTCGAACCAAAATGAATCGGATCCGTTTAAAGATAACGGAGAGCCAATTGATATATCAGATGATGATTTA
CCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.116

100

0.691
  ssb Latilactobacillus sakei subsp. sakei 23K

56.647

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

65.432

0.401
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.377

Multiple sequence alignment