Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   DM611_RS18065 Genome accession   NZ_CP029773
Coordinates   3878140..3879198 (-) Length   352 a.a.
NCBI ID   WP_010484061.1    Uniprot ID   A0A0L8AA94
Organism   Stenotrophomonas maltophilia strain SJTL3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3873140..3884198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DM611_RS18045 (DM611_18045) - 3874069..3876036 (-) 1968 WP_110713446.1 type IV pilus secretin PilQ family protein -
  DM611_RS18050 (DM611_18050) - 3876058..3876594 (-) 537 WP_239496496.1 pilus assembly protein PilP -
  DM611_RS18055 (DM611_18055) pilO 3876591..3877247 (-) 657 WP_110713450.1 type 4a pilus biogenesis protein PilO -
  DM611_RS18060 (DM611_18060) - 3877244..3878140 (-) 897 WP_110713451.1 PilN domain-containing protein -
  DM611_RS18065 (DM611_18065) pilM 3878140..3879198 (-) 1059 WP_010484061.1 pilus assembly protein PilM Machinery gene
  DM611_RS18070 (DM611_18070) - 3879418..3881841 (+) 2424 WP_110713453.1 penicillin-binding protein 1A -
  DM611_RS18075 (DM611_18075) - 3882137..3882781 (+) 645 WP_010484059.1 hypothetical protein -
  DM611_RS18080 (DM611_18080) - 3882982..3883731 (-) 750 WP_110713454.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37753.41 Da        Isoelectric Point: 4.4089

>NTDB_id=296019 DM611_RS18065 WP_010484061.1 3878140..3879198(-) (pilM) [Stenotrophomonas maltophilia strain SJTL3]
MGLIPKSQSPLVGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAMNRSGSKAKLAAAA
VAGSAVITKVIPMPAELDENDMEAQIELEAVNYIPYPIEEVNLDFEVIGAIPNNPEMVQVLLAASRSENVELRQSALELG
GLQAKVMDVEAFAVENAYALVASELPVSIEGVVALVDIGATMTTLNVLRGGRSLYSREQVFGGKQLTDEIMRRYGLSYEE
AGLAKRQGGLPESYEMEVLEPFKEATVQQISRLLQFFYAGSEFNRVDHIVLAGGCAVLGGLPEMVEEQLGVPTVVANPLA
QMTLGPKVNAHALAQDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=296019 DM611_RS18065 WP_010484061.1 3878140..3879198(-) (pilM) [Stenotrophomonas maltophilia strain SJTL3]
GTGGGGCTCATCCCAAAAAGTCAGTCGCCGCTTGTGGGCGTCGACATCAGTTCGACTGCGGTAAAGCTTTTGCAGCTGTC
CCGCAGTGGCAACCGTTTTCGTGTGGAACATTACGCTGTGGAACCTCTTCCGCCGAATGCGGTGGTGGAGAAGAACATCG
TGGAAGTGGAGGCCGTGGGTGAGGCTATCCGCCGCGCGATGAACCGCTCGGGGAGCAAGGCCAAGCTGGCCGCTGCCGCC
GTCGCCGGGTCGGCGGTGATCACCAAGGTGATCCCGATGCCGGCCGAGCTCGACGAAAACGACATGGAAGCCCAGATCGA
GCTGGAAGCGGTCAACTACATTCCGTACCCGATCGAGGAAGTGAACCTGGACTTCGAGGTGATCGGGGCGATCCCGAACA
ACCCGGAGATGGTCCAGGTGCTGCTGGCCGCGTCGCGTTCGGAGAACGTGGAACTGCGCCAGTCGGCGCTGGAGCTGGGT
GGCCTGCAGGCCAAGGTGATGGACGTGGAGGCCTTCGCGGTCGAGAACGCCTATGCCCTTGTCGCCAGCGAGCTGCCGGT
ATCCATCGAGGGCGTGGTCGCGCTGGTCGACATCGGCGCCACCATGACCACCCTCAATGTCCTGCGCGGCGGCCGCAGCC
TGTACAGCCGCGAACAGGTGTTCGGTGGCAAGCAGCTGACCGACGAGATCATGCGCCGCTACGGCCTGAGCTACGAGGAA
GCCGGACTGGCCAAGCGCCAGGGCGGGCTGCCGGAAAGCTACGAGATGGAAGTGCTGGAGCCGTTCAAGGAAGCCACGGT
CCAGCAGATCAGCCGCCTGCTGCAGTTCTTCTATGCGGGCAGTGAGTTCAACCGCGTCGACCACATCGTGCTGGCCGGCG
GCTGCGCCGTGCTCGGCGGTCTGCCGGAAATGGTCGAGGAACAGCTGGGCGTGCCGACCGTGGTCGCCAACCCGCTGGCA
CAGATGACCCTGGGCCCGAAGGTGAACGCGCATGCGCTGGCCCAGGATGCCCCCGCGCTGATGATCGCCACCGGTCTGGC
GCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0L8AA94

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

51.136

100

0.511
  comM Acinetobacter nosocomialis M2

51.136

100

0.511
  comM Acinetobacter baylyi ADP1

50

100

0.5
  pilM Legionella pneumophila strain ERS1305867

47.578

99.716

0.474

Multiple sequence alignment