Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DM292_RS15215 Genome accession   NZ_CP029772
Coordinates   3251090..3251581 (-) Length   163 a.a.
NCBI ID   WP_063544073.1    Uniprot ID   A0AA47E3M5
Organism   Stutzerimonas frequens strain R2A2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3246090..3256581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DM292_RS15190 (DM292_15190) - 3246211..3247557 (-) 1347 WP_110778138.1 MotA/TolQ/ExbB proton channel family protein -
  DM292_RS15195 (DM292_15195) - 3247554..3248339 (-) 786 WP_110778139.1 DUF3450 domain-containing protein -
  DM292_RS15200 (DM292_15200) - 3248524..3249201 (+) 678 WP_110778140.1 OmpW family protein -
  DM292_RS15205 (DM292_15205) - 3249272..3250201 (-) 930 WP_110778141.1 NAD-dependent epimerase/dehydratase family protein -
  DM292_RS15210 (DM292_15210) - 3250194..3251078 (-) 885 WP_102840424.1 sugar nucleotide-binding protein -
  DM292_RS15215 (DM292_15215) ssb 3251090..3251581 (-) 492 WP_063544073.1 single-stranded DNA-binding protein Machinery gene
  DM292_RS15220 (DM292_15220) - 3251744..3253111 (-) 1368 WP_110778142.1 MFS transporter -
  DM292_RS15225 (DM292_15225) uvrA 3253243..3256080 (+) 2838 WP_102840422.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18341.41 Da        Isoelectric Point: 5.9492

>NTDB_id=295990 DM292_RS15215 WP_063544073.1 3251090..3251581(-) (ssb) [Stutzerimonas frequens strain R2A2]
MARGVNKVILIGNVGGDPETRYMPNGNAVTNITLATTDSWKDKQTGQLQERTEWHRVVLFGKVAEIAGEYLRKGSQCYIE
GRLQTREWEKDGVKRYTTEIVVDMNGTMQLLGGRGGNSDDAPRQPRPQREPQQAPRQQAQPQQPAARQQPAPDYDSFDDD
IPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=295990 DM292_RS15215 WP_063544073.1 3251090..3251581(-) (ssb) [Stutzerimonas frequens strain R2A2]
ATGGCCAGAGGGGTGAACAAAGTCATCTTGATCGGCAATGTCGGCGGCGACCCGGAAACCCGCTACATGCCCAATGGCAA
TGCGGTGACCAATATCACGCTGGCAACCACCGACAGCTGGAAAGACAAGCAGACCGGTCAGCTGCAAGAGCGTACCGAGT
GGCACCGTGTGGTGCTGTTCGGCAAGGTCGCCGAAATCGCCGGCGAGTACCTGCGCAAGGGTTCGCAGTGCTACATCGAA
GGTCGCCTGCAGACGCGCGAGTGGGAAAAGGATGGCGTCAAGCGCTACACCACCGAAATCGTCGTCGACATGAATGGCAC
CATGCAGCTGCTCGGCGGCCGTGGTGGCAATTCCGACGATGCGCCACGCCAGCCGCGCCCGCAGCGCGAGCCGCAGCAGG
CCCCGCGTCAGCAGGCCCAGCCGCAGCAGCCTGCTGCCCGGCAGCAGCCCGCGCCGGACTATGACAGCTTCGACGACGAC
ATCCCCTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.571

100

0.607
  ssb Neisseria gonorrhoeae MS11

48.295

100

0.521
  ssb Neisseria meningitidis MC58

47.159

100

0.509
  ssb Glaesserella parasuis strain SC1401

45.856

100

0.509

Multiple sequence alignment