Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | DLM82_RS08865 | Genome accession | NZ_CP029749 |
| Coordinates | 1682910..1683401 (-) | Length | 163 a.a. |
| NCBI ID | WP_000609586.1 | Uniprot ID | A0AAD2WUV1 |
| Organism | Streptococcus agalactiae strain PLGBS13 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1677910..1688401
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DLM82_RS08850 (DLM82_08835) | - | 1680816..1681487 (-) | 672 | WP_000174844.1 | DUF1129 domain-containing protein | - |
| DLM82_RS08855 (DLM82_08840) | - | 1681512..1682456 (-) | 945 | WP_000812124.1 | magnesium transporter CorA family protein | - |
| DLM82_RS08860 (DLM82_08845) | rpsR | 1682626..1682865 (-) | 240 | WP_000068665.1 | 30S ribosomal protein S18 | - |
| DLM82_RS08865 (DLM82_08850) | ssb | 1682910..1683401 (-) | 492 | WP_000609586.1 | single-stranded DNA-binding protein | Machinery gene |
| DLM82_RS08870 (DLM82_08855) | rpsF | 1683413..1683700 (-) | 288 | WP_001151773.1 | 30S ribosomal protein S6 | - |
| DLM82_RS08875 (DLM82_08860) | mutY | 1684763..1685917 (+) | 1155 | WP_016480119.1 | A/G-specific adenine glycosylase | - |
| DLM82_RS08880 (DLM82_08865) | - | 1686094..1686687 (+) | 594 | WP_000402392.1 | helix-turn-helix domain-containing protein | - |
| DLM82_RS08885 (DLM82_08870) | trxA | 1686733..1687047 (-) | 315 | WP_001162959.1 | thioredoxin | - |
| DLM82_RS08890 (DLM82_08875) | - | 1687128..1687628 (-) | 501 | WP_000446806.1 | phosphatase PAP2 family protein | - |
Sequence
Protein
Download Length: 163 a.a. Molecular weight: 18155.77 Da Isoelectric Point: 4.9119
>NTDB_id=295858 DLM82_RS08865 WP_000609586.1 1682910..1683401(-) (ssb) [Streptococcus agalactiae strain PLGBS13]
MINNVVLVGRMTRDAELRYTPSNQAVATFSLAVNRNFKNQSGEREADFINCVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVAESFQLLESRATREGGSSNSYNNGGYNNAPSNNSYSASSQQTPNFSRDESPFGNSNPMDISDDD
LPF
MINNVVLVGRMTRDAELRYTPSNQAVATFSLAVNRNFKNQSGEREADFINCVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVAESFQLLESRATREGGSSNSYNNGGYNNAPSNNSYSASSQQTPNFSRDESPFGNSNPMDISDDD
LPF
Nucleotide
Download Length: 492 bp
>NTDB_id=295858 DLM82_RS08865 WP_000609586.1 1682910..1683401(-) (ssb) [Streptococcus agalactiae strain PLGBS13]
ATGATTAATAATGTAGTACTTGTAGGTCGCATGACCCGTGATGCAGAACTTCGTTATACACCAAGTAATCAAGCGGTAGC
CACTTTTTCACTTGCAGTTAATCGTAATTTTAAAAATCAATCTGGCGAACGTGAGGCTGATTTTATTAACTGTGTTATTT
GGCGCCAACAAGCTGAAAACTTGGCTAACTGGGCAAAAAAAGGTGCTTTGGTTGGAATTACAGGTCGTATCCAAACACGT
AATTATGAAAACCAACAAGGTCAACGTGTCTATGTAACAGAAGTTGTTGCGGAAAGTTTCCAATTATTGGAAAGTCGTGC
TACACGAGAAGGTGGTTCATCTAACTCTTATAATAACGGTGGCTATAACAATGCTCCGTCAAATAATAGTTATTCAGCTT
CTTCTCAACAAACGCCTAATTTTAGTCGTGATGAGAGTCCGTTTGGTAACTCAAATCCAATGGATATTTCAGATGATGAT
CTACCATTCTAA
ATGATTAATAATGTAGTACTTGTAGGTCGCATGACCCGTGATGCAGAACTTCGTTATACACCAAGTAATCAAGCGGTAGC
CACTTTTTCACTTGCAGTTAATCGTAATTTTAAAAATCAATCTGGCGAACGTGAGGCTGATTTTATTAACTGTGTTATTT
GGCGCCAACAAGCTGAAAACTTGGCTAACTGGGCAAAAAAAGGTGCTTTGGTTGGAATTACAGGTCGTATCCAAACACGT
AATTATGAAAACCAACAAGGTCAACGTGTCTATGTAACAGAAGTTGTTGCGGAAAGTTTCCAATTATTGGAAAGTCGTGC
TACACGAGAAGGTGGTTCATCTAACTCTTATAATAACGGTGGCTATAACAATGCTCCGTCAAATAATAGTTATTCAGCTT
CTTCTCAACAAACGCCTAATTTTAGTCGTGATGAGAGTCCGTTTGGTAACTCAAATCCAATGGATATTTCAGATGATGAT
CTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
60.465 |
100 |
0.638 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
58.286 |
100 |
0.626 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
55.963 |
66.871 |
0.374 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
56.604 |
65.031 |
0.368 |