Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AM461_RS01095 Genome accession   NZ_CP029736
Coordinates   252752..253273 (-) Length   173 a.a.
NCBI ID   WP_109912589.1    Uniprot ID   -
Organism   Providencia rettgeri strain AR_0082     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 247752..258273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM461_RS01070 (AM461_01070) ilvN 248147..248431 (-) 285 WP_004914949.1 acetolactate synthase small subunit -
  AM461_RS01075 (AM461_01075) ilvB 248434..250131 (-) 1698 WP_110731424.1 acetolactate synthase large subunit -
  AM461_RS01080 (AM461_01080) ivbL 250235..250324 (-) 90 WP_109912586.1 ilvB operon leader peptide IvbL -
  AM461_RS01085 (AM461_01085) - 250658..251830 (+) 1173 WP_109912587.1 MFS transporter -
  AM461_RS01090 (AM461_01090) - 252070..252477 (+) 408 WP_109912588.1 helix-turn-helix domain-containing protein -
  AM461_RS01095 (AM461_01095) ssb 252752..253273 (-) 522 WP_109912589.1 single-stranded DNA-binding protein Machinery gene
  AM461_RS01100 (AM461_01100) uvrA 253784..256618 (+) 2835 WP_109912590.1 excinuclease ABC subunit UvrA -
  AM461_RS01105 (AM461_01105) - 256698..257894 (-) 1197 WP_109912591.1 aromatic amino acid transaminase -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18561.60 Da        Isoelectric Point: 4.9468

>NTDB_id=295673 AM461_RS01095 WP_109912589.1 252752..253273(-) (ssb) [Providencia rettgeri strain AR_0082]
MASRGVNKVILIGNLGQDPEIRYMPNGGAVANLTLATSESWRDKQTGEMREKTEWHRVVIFGKLAEVAGEYLKKGSQVYI
EGSLQTRKWQDQSGQDRYTTEVVVNIGGSMQMLGGRGGDAPSQGQGGQGGWGQPQQPQAAQQFSGGGAPAARPSAPAPQT
NEPPMDFDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=295673 AM461_RS01095 WP_109912589.1 252752..253273(-) (ssb) [Providencia rettgeri strain AR_0082]
ATGGCCAGCAGAGGCGTAAATAAAGTAATTCTTATCGGTAACCTAGGACAAGATCCAGAAATCCGTTATATGCCTAACGG
CGGAGCTGTGGCAAACCTGACTCTGGCAACTTCTGAAAGTTGGCGTGACAAGCAAACCGGTGAGATGCGTGAAAAAACCG
AATGGCACCGAGTCGTTATTTTCGGCAAACTTGCTGAGGTAGCAGGTGAATACCTAAAAAAAGGTTCACAAGTCTATATC
GAAGGTTCTCTGCAAACACGTAAATGGCAAGATCAAAGTGGTCAAGATCGTTATACGACAGAAGTTGTTGTGAATATCGG
TGGCTCAATGCAAATGTTAGGTGGCCGTGGCGGTGATGCACCATCACAAGGTCAAGGCGGTCAAGGTGGTTGGGGCCAAC
CACAGCAGCCTCAAGCGGCACAACAATTCAGTGGTGGTGGAGCGCCAGCCGCACGCCCATCAGCACCTGCACCACAAACC
AATGAACCACCAATGGATTTTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.667

100

0.746
  ssb Glaesserella parasuis strain SC1401

56.684

100

0.613
  ssb Neisseria meningitidis MC58

46.927

100

0.486
  ssb Neisseria gonorrhoeae MS11

46.591

100

0.474

Multiple sequence alignment