Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EQH38_RS06555 Genome accession   NZ_CP035242
Coordinates   1261535..1262215 (-) Length   226 a.a.
NCBI ID   WP_000286922.1    Uniprot ID   Q97QW0
Organism   Streptococcus pneumoniae strain TVO_1901947     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1256535..1267215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH38_RS06520 (EQH38_06885) - 1256766..1257335 (+) 570 WP_000681292.1 CYTH domain-containing protein -
  EQH38_RS06525 (EQH38_06890) - 1257448..1258407 (+) 960 WP_001283813.1 ribose-phosphate diphosphokinase -
  EQH38_RS06530 (EQH38_06895) - 1258417..1259532 (+) 1116 WP_000639661.1 cysteine desulfurase family protein -
  EQH38_RS06535 (EQH38_06900) - 1259537..1259883 (+) 347 Protein_1267 DUF1831 domain-containing protein -
  EQH38_RS06540 (EQH38_06905) - 1259891..1260106 (+) 216 WP_000462488.1 DUF4649 family protein -
  EQH38_RS06545 (EQH38_06910) - 1260190..1260831 (+) 642 WP_050237346.1 redox-sensing transcriptional repressor Rex -
  EQH38_RS06550 (EQH38_06915) - 1260849..1261538 (+) 690 WP_050237345.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  EQH38_RS06555 (EQH38_06920) radC 1261535..1262215 (-) 681 WP_000286922.1 RadC family protein Machinery gene
  EQH38_RS06560 (EQH38_06925) pcrA 1262258..1264549 (-) 2292 WP_054366172.1 DNA helicase PcrA -
  EQH38_RS06565 (EQH38_06930) - 1264740..1265545 (-) 806 Protein_1273 IS5 family transposase -
  EQH38_RS06570 (EQH38_06940) - 1265926..1266786 (-) 861 WP_000631543.1 methionyl aminopeptidase -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25535.53 Da        Isoelectric Point: 7.1203

>NTDB_id=295658 EQH38_RS06555 WP_000286922.1 1261535..1262215(-) (radC) [Streptococcus pneumoniae strain TVO_1901947]
MYSISFQEDSLLPRERLAKEGVEALSNQELLAILLRTGTRQASVFEIAQKVLNNLSSLTDLKKMTLQELQSLSGIGRVKA
IELQAMIELGHRIHKHETLEMESILSSQKLAKKMQQELGDKKQEHLVALYLNTQNQIIHQQTIFIGSVTRSIAEPREILH
YAIKHMATSLILVHNHPSGAVAPSQNDDHVTKLVKEACELMGIVLLDHLIVSHSNYFSYREKTDLI

Nucleotide


Download         Length: 681 bp        

>NTDB_id=295658 EQH38_RS06555 WP_000286922.1 1261535..1262215(-) (radC) [Streptococcus pneumoniae strain TVO_1901947]
ATGTACAGTATTTCATTCCAAGAAGATTCACTATTACCAAGAGAAAGGCTGGCCAAGGAAGGAGTTGAAGCGCTTAGTAA
CCAAGAGTTGCTAGCTATTTTACTCAGGACAGGAACACGTCAAGCTAGCGTTTTTGAAATTGCCCAAAAAGTCTTGAACA
ATCTTTCAAGCCTAACGGATTTGAAAAAAATGACCCTGCAGGAATTGCAGAGTTTGTCTGGTATTGGGCGTGTTAAGGCC
ATAGAATTACAAGCTATGATTGAACTGGGGCATCGTATTCACAAACACGAGACTCTTGAAATGGAAAGTATTCTCAGCAG
TCAAAAGTTGGCCAAGAAGATGCAGCAGGAATTAGGGGATAAAAAACAAGAGCACCTGGTGGCACTCTATCTCAATACTC
AAAATCAAATCATCCATCAGCAGACCATTTTTATCGGTTCTGTAACTCGTAGTATCGCTGAACCGCGAGAGATTCTGCAC
TATGCAATCAAGCATATGGCGACTTCTCTTATCTTGGTCCACAATCATCCTTCAGGAGCGGTAGCGCCTAGCCAAAATGA
TGATCATGTCACTAAACTTGTTAAAGAAGCCTGCGAACTGATGGGGATTGTTCTCTTGGACCATTTGATTGTCTCTCATT
CTAATTACTTTAGTTATCGTGAAAAGACAGATTTAATCTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(13-81)

RadC-like JAB domain (RadC)

(106-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q97QW0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus pneumoniae TIGR4

100

100

1
  radC Streptococcus pneumoniae R6

99.558

100

0.996
  radC Streptococcus pneumoniae D39

99.558

100

0.996
  radC Streptococcus gordonii str. Challis substr. CH1

76.106

100

0.761
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

48.095

92.92

0.447