Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AN232_RS02555 Genome accession   NZ_CP029727
Coordinates   502331..502855 (-) Length   174 a.a.
NCBI ID   WP_069325111.1    Uniprot ID   -
Organism   Citrobacter sp. CRE-46 strain AR_0157     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 497331..507855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AN232_RS02530 (AN232_02530) soxR 498975..499433 (-) 459 WP_003826630.1 redox-sensitive transcriptional activator SoxR -
  AN232_RS02535 (AN232_02535) soxS 499520..499843 (+) 324 WP_005132611.1 superoxide response transcriptional regulator SoxS -
  AN232_RS02540 (AN232_02540) - 499846..501432 (-) 1587 WP_110496227.1 EAL domain-containing protein -
  AN232_RS02550 (AN232_02550) - 501984..502265 (+) 282 WP_038636276.1 YjcB family protein -
  AN232_RS02555 (AN232_02555) ssb 502331..502855 (-) 525 WP_069325111.1 single-stranded DNA-binding protein SSB1 Machinery gene
  AN232_RS02565 (AN232_02565) uvrA 503107..505929 (+) 2823 WP_110496229.1 excinuclease ABC subunit UvrA -
  AN232_RS02570 (AN232_02570) - 506015..506371 (-) 357 WP_038636271.1 MmcQ/YjbR family DNA-binding protein -
  AN232_RS02575 (AN232_02575) aphA 506498..507211 (-) 714 WP_038636269.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18651.68 Da        Isoelectric Point: 5.2456

>NTDB_id=295648 AN232_RS02555 WP_069325111.1 502331..502855(-) (ssb) [Citrobacter sp. CRE-46 strain AR_0157]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQSGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQSAPAAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=295648 AN232_RS02555 WP_069325111.1 502331..502855(-) (ssb) [Citrobacter sp. CRE-46 strain AR_0157]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTATATGCCGAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAAATGAAAGAGCAGACTG
AATGGCACCGTGTCGTGCTGTTCGGCAAACTGGCGGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGCGTAGAAAAGTACACCACTGAAGTTGTGGTTAACGTTGG
CGGCACCATGCAAATGCTGGGTGGCCGTCAGAGTGGTGGTGCTCCGGCAGGCGGCGGTCAGCAGCAGGGCGGTTGGGGTC
AGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCAGCTCCGGCAGCGCCG
TCTAACGAGCCGCCGATGGATTTTGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.889

100

0.764
  ssb Glaesserella parasuis strain SC1401

57.377

100

0.603
  ssb Neisseria meningitidis MC58

49.162

100

0.506
  ssb Neisseria gonorrhoeae MS11

49.162

100

0.506

Multiple sequence alignment