Detailed information NTG0295393

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: DKY63_RS27120
• Genome accession: NZ_CP029693
• Coordinates: 5784408..5786642 (+)
• Length: 744 a.a.
• NCBI ID: WP_110966935.1
• Uniprot ID: A0A2Z4RQY8
• Organism: Pseudomonas putida strain JBC17
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5779408..5791642

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DKY63_RS27095 (DKY63_27095)	-	5780424..5781083 (+)	660	WP_110967990.1	transglutaminase family protein	-
DKY63_RS27100 (DKY63_27100)	-	5781127..5781750 (+)	624	WP_110966932.1	glutathione S-transferase	-
DKY63_RS27105 (DKY63_27105)	-	5781884..5782816 (+)	933	WP_110966933.1	ABC transporter ATP-binding protein	-
DKY63_RS27110 (DKY63_27110)	-	5782813..5783592 (+)	780	WP_077047013.1	ABC transporter permease	-
DKY63_RS27115 (DKY63_27115)	-	5783756..5784271 (-)	516	WP_110966934.1	DUF2062 domain-containing protein	-
DKY63_RS27120 (DKY63_27120)	comA	5784408..5786642 (+)	2235	WP_110966935.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
DKY63_RS27125 (DKY63_27125)	exbB	5786741..5787376 (+)	636	WP_162634928.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
DKY63_RS27130 (DKY63_27130)	-	5787373..5787801 (+)	429	WP_110966937.1	biopolymer transporter ExbD	-
DKY63_RS27135 (DKY63_27135)	lpxK	5787801..5788811 (+)	1011	WP_110967991.1	tetraacyldisaccharide 4'-kinase	-
DKY63_RS27140 (DKY63_27140)	-	5788836..5789021 (+)	186	WP_007945752.1	Trm112 family protein	-
DKY63_RS27145 (DKY63_27145)	kdsB	5789018..5789782 (+)	765	WP_110966938.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
DKY63_RS27150 (DKY63_27150)	-	5789782..5790246 (+)	465	WP_110966939.1	low molecular weight protein-tyrosine-phosphatase	-
DKY63_RS27155 (DKY63_27155)	murB	5790243..5791262 (+)	1020	WP_110966940.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 744 a.a.
• Molecular weight: 81534.64 Da
• Isoelectric Point: 10.2175

>NTDB_id=295393 DKY63_RS27120 WP_110966935.1 5784408..5786642(+) (comA) [Pseudomonas putida strain JBC17]
MRTGMVALALGLLALRFLPALPPVGLWLLLPVVGLMLLPFRTYPVAFFLFGLSWAGAQAQSALDDRLRPNLDGETRWVEG
RVVGLPAHGDAAVRFELADTRSRHGRVPQRMRLAWYGGAAVNSGERWRLAVKLKRPAGLLNPHAFDYDAWLLAQRIGATG
TVKDGERLAEARWAWRDGVRQRLLQVDAQGRTGVLVALVLGDGAGLSREDWQVLQDTGTVHLLVISGQHIGLLAGLVYLL
IAGLARYGLWPARLLWLPWACGLAFAAALGYGLLAGFEVPVRRACLMIGLVLLWRLRFRHLGAWWPLLLALNGVLLLDPL
ASLQPGFWLSFGAVLVLIFTFSGRLGPWRWWQTWTRAQWLIAIGLAPLLLVLGLPISLSGPLVNLLAVPWISMLVLPPAL
LGTLLLPVPYVGEGLLWLAGGLIDGLFRGLGMMAGQVPAWIPVTVSGWVWGLGAIGAFLLLLPRGVPLRPLGWPLLLVLV
VPPKPALPEGVAEIWQLDVGQGLAILVRTRHHTLLFDAGPRMGDNDLGERVVVPVLRKLGVDALDQMIISHAHIDHSGGA
QAVTRALRVQQVISGEPEELPAELQALECESGRQWTWDGVNFELWRWADARESNPKSCVLQIEASGERLLLTGDIDASAE
RVLLDSPLAVQTDWLQSPHHGSRSSSSTALLNGLQPKAVLISRGRGNSFGHPHPTVVARYRKRGMAIYDSAEQGAIHLQL
GRFELPRSMRLERRFWRDPPPAPE

Nucleotide

• Length: 2235 bp

>NTDB_id=295393 DKY63_RS27120 WP_110966935.1 5784408..5786642(+) (comA) [Pseudomonas putida strain JBC17]
ATGCGCACAGGGATGGTGGCGTTGGCGCTGGGCTTGCTGGCCCTGCGTTTTTTACCGGCATTGCCGCCGGTCGGATTGTG
GCTGTTGTTACCGGTAGTCGGTTTGATGCTGCTGCCGTTTCGCACCTACCCCGTGGCGTTTTTTCTCTTCGGGTTGAGCT
GGGCCGGAGCCCAGGCGCAATCGGCGCTGGATGACCGGTTGCGGCCGAATCTGGATGGCGAGACACGCTGGGTTGAAGGG
CGTGTCGTGGGCTTGCCTGCGCATGGCGATGCGGCCGTGCGTTTCGAATTGGCGGACACCCGGTCGCGACACGGCCGCGT
GCCACAACGCATGCGCCTGGCCTGGTATGGGGGGGCTGCGGTCAACAGCGGCGAACGCTGGCGACTGGCGGTCAAGTTGA
AGCGACCAGCCGGGCTGCTCAATCCCCATGCCTTCGACTACGACGCCTGGTTGCTGGCCCAGCGCATCGGCGCGACCGGC
ACCGTCAAGGATGGCGAGCGGCTGGCCGAGGCGCGGTGGGCTTGGCGTGACGGCGTTCGACAAAGGTTGCTGCAAGTGGA
CGCTCAGGGGCGAACGGGCGTGCTGGTGGCGTTGGTACTGGGGGATGGCGCCGGGCTCAGTCGCGAAGACTGGCAGGTGT
TGCAGGACACCGGCACCGTGCACCTGTTGGTGATTTCCGGGCAGCACATCGGGTTGCTGGCGGGGCTGGTGTATTTGCTG
ATCGCCGGGCTGGCCCGATATGGCTTGTGGCCAGCCCGCCTGCTGTGGCTGCCCTGGGCCTGCGGCCTGGCTTTCGCTGC
GGCGCTCGGATACGGACTGTTGGCCGGTTTCGAGGTACCGGTACGGCGTGCCTGCCTGATGATCGGTCTGGTGTTGTTAT
GGCGCCTGCGATTTCGCCACCTTGGCGCCTGGTGGCCGCTCCTTCTTGCGCTCAATGGCGTGCTGTTGCTGGATCCATTG
GCCAGCCTGCAACCGGGATTCTGGTTGTCTTTCGGGGCGGTGTTGGTGCTGATCTTCACTTTCAGCGGACGATTGGGGCC
GTGGCGATGGTGGCAAACCTGGACCCGCGCCCAATGGCTGATCGCAATCGGGTTGGCGCCGTTGTTGCTGGTTCTCGGGT
TGCCGATCAGTCTCAGTGGGCCGCTGGTCAATCTGTTGGCGGTGCCCTGGATCAGCATGCTGGTATTGCCACCGGCCTTG
CTGGGAACCCTTTTGCTGCCCGTCCCCTATGTAGGGGAGGGTCTGTTGTGGCTGGCCGGCGGGTTGATTGACGGGTTGTT
CCGGGGGCTGGGGATGATGGCCGGGCAGGTTCCCGCGTGGATACCTGTGACGGTTTCGGGGTGGGTATGGGGCTTGGGGG
CGATCGGTGCGTTTCTGCTTCTGCTGCCGCGAGGCGTGCCGCTGCGGCCCTTGGGTTGGCCATTGCTGTTGGTACTCGTC
GTCCCGCCCAAACCTGCGCTGCCGGAAGGTGTTGCGGAAATCTGGCAGCTGGATGTCGGTCAGGGTTTGGCCATCCTGGT
TCGAACCCGCCATCACACGCTGTTGTTTGACGCTGGACCACGCATGGGTGACAACGATCTCGGTGAGCGTGTCGTGGTAC
CGGTCTTGCGCAAACTGGGTGTGGATGCACTCGATCAGATGATCATCAGCCACGCCCACATTGATCATTCCGGTGGAGCT
CAGGCGGTTACCAGGGCACTGCGGGTGCAGCAGGTCATCAGTGGCGAGCCCGAGGAGCTGCCGGCTGAACTACAAGCCCT
GGAATGTGAAAGCGGGCGGCAATGGACCTGGGATGGCGTGAACTTCGAGCTTTGGCGCTGGGCGGATGCCCGGGAAAGCA
ATCCGAAATCCTGCGTCCTGCAGATTGAGGCCAGCGGCGAGCGATTGCTGTTGACCGGCGACATCGACGCCAGCGCCGAG
CGTGTGCTGCTCGACAGCCCGCTGGCGGTCCAGACTGACTGGCTGCAATCGCCCCACCATGGCAGTCGCAGCTCCTCCTC
AACGGCATTGCTCAATGGATTGCAGCCCAAGGCTGTGCTGATCTCTCGCGGCCGGGGCAACTCGTTCGGTCACCCCCATC
CGACAGTCGTGGCGCGCTATCGAAAACGTGGCATGGCTATCTACGACAGCGCGGAGCAGGGTGCCATTCATCTGCAATTG
GGGCGCTTCGAGCTGCCACGGTCAATGCGTCTGGAACGGCGGTTCTGGCGCGATCCGCCACCGGCTCCTGAATAA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (198-463)

• Domain of unknown function (DUF4131) (DUF4131) (21-167)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-678)

3D structure

• AlphaFold DB: A0A2Z4RQY8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	62.309	96.64	0.602
comA	Ralstonia pseudosolanacearum GMI1000	33.373	100	0.376