Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   DKY63_RS27125 Genome accession   NZ_CP029693
Coordinates   5786741..5787376 (+) Length   211 a.a.
NCBI ID   WP_162634928.1    Uniprot ID   -
Organism   Pseudomonas putida strain JBC17     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5781741..5792376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKY63_RS27105 (DKY63_27105) - 5781884..5782816 (+) 933 WP_110966933.1 ABC transporter ATP-binding protein -
  DKY63_RS27110 (DKY63_27110) - 5782813..5783592 (+) 780 WP_077047013.1 ABC transporter permease -
  DKY63_RS27115 (DKY63_27115) - 5783756..5784271 (-) 516 WP_110966934.1 DUF2062 domain-containing protein -
  DKY63_RS27120 (DKY63_27120) comA 5784408..5786642 (+) 2235 WP_110966935.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DKY63_RS27125 (DKY63_27125) exbB 5786741..5787376 (+) 636 WP_162634928.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  DKY63_RS27130 (DKY63_27130) - 5787373..5787801 (+) 429 WP_110966937.1 biopolymer transporter ExbD -
  DKY63_RS27135 (DKY63_27135) lpxK 5787801..5788811 (+) 1011 WP_110967991.1 tetraacyldisaccharide 4'-kinase -
  DKY63_RS27140 (DKY63_27140) - 5788836..5789021 (+) 186 WP_007945752.1 Trm112 family protein -
  DKY63_RS27145 (DKY63_27145) kdsB 5789018..5789782 (+) 765 WP_110966938.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  DKY63_RS27150 (DKY63_27150) - 5789782..5790246 (+) 465 WP_110966939.1 low molecular weight protein-tyrosine-phosphatase -
  DKY63_RS27155 (DKY63_27155) murB 5790243..5791262 (+) 1020 WP_110966940.1 UDP-N-acetylmuramate dehydrogenase -
  DKY63_RS27160 (DKY63_27160) - 5791505..5791975 (+) 471 WP_110966941.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22865.06 Da        Isoelectric Point: 7.3615

>NTDB_id=295394 DKY63_RS27125 WP_162634928.1 5786741..5787376(+) (exbB) [Pseudomonas putida strain JBC17]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGTGMATNPAVLAGGISKALVTTA
SGLIVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=295394 DKY63_RS27125 WP_162634928.1 5786741..5787376(+) (exbB) [Pseudomonas putida strain JBC17]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGCTGCCGATCATCCTGAGCTCCATCGCAGCCATGGCGATCGTCGC
CGAGCGCCTGTGGACCCTGCGGGCCAGTCGCGTGACCCCGGAGCATTTGCTCGGGCAGGTCTGGGTCTGGATCAAGGACA
AGCAACTCAATAAAGAAAAACTCAAGGAACTGCGCGCCAATTCGCCGCTGGGCGAGATCCTCGCGGCGGGCCTGGCCAAC
TCCAAACATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCCGCCCGGGTCATTCACGAACTGGAACGCTACAT
CAACGCCCTGGGCACCATCGCCGCCATGGCGCCGCTGCTGGGCTTGCTCGGCACCGTGTTGGGCATGATCGATATCTTCA
GTTCCTTCATGGGCACCGGCATGGCGACCAACCCGGCGGTGCTGGCCGGCGGTATTTCCAAAGCCCTGGTGACCACGGCT
TCCGGTCTGATCGTCGGTATCCCGGCGGTGTTCTTCCACCGTTTCCTGCAACGTCGCATTGATGAGCTCGTCGTGGGCAT
GGAACAGGAAGCCATCAAACTGGTTGAAGTGGTGCAGGGCGACCGTGACGTTGACCTGGCCGGGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

83.412

100

0.834

Multiple sequence alignment