Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | DKY63_RS16775 | Genome accession | NZ_CP029693 |
| Coordinates | 3601312..3601824 (-) | Length | 170 a.a. |
| NCBI ID | WP_110965122.1 | Uniprot ID | A0A7Y5YIM6 |
| Organism | Pseudomonas putida strain JBC17 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 3596312..3606824
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DKY63_RS16745 (DKY63_16745) | - | 3596794..3597375 (+) | 582 | WP_110965116.1 | YjfI family protein | - |
| DKY63_RS16750 (DKY63_16750) | - | 3597415..3598113 (+) | 699 | WP_110965117.1 | PspA/IM30 family protein | - |
| DKY63_RS16755 (DKY63_16755) | - | 3598220..3598900 (+) | 681 | WP_110965118.1 | DUF2491 family protein | - |
| DKY63_RS16760 (DKY63_16760) | - | 3598915..3599343 (+) | 429 | WP_110965119.1 | DUF350 domain-containing protein | - |
| DKY63_RS16765 (DKY63_16765) | - | 3599360..3600070 (+) | 711 | WP_110965120.1 | DUF1190 domain-containing protein | - |
| DKY63_RS16770 (DKY63_16770) | - | 3600084..3601241 (+) | 1158 | WP_110965121.1 | glutathionylspermidine synthase family protein | - |
| DKY63_RS16775 (DKY63_16775) | ssb | 3601312..3601824 (-) | 513 | WP_110965122.1 | single-stranded DNA-binding protein | Machinery gene |
| DKY63_RS16780 (DKY63_16780) | - | 3601834..3603231 (-) | 1398 | WP_110965123.1 | MFS transporter | - |
| DKY63_RS16785 (DKY63_16785) | uvrA | 3603423..3606257 (+) | 2835 | WP_110965124.1 | excinuclease ABC subunit UvrA | - |
| DKY63_RS16790 (DKY63_16790) | bfr | 3606321..3606785 (-) | 465 | WP_110965125.1 | bacterioferritin | - |
Sequence
Protein
Download Length: 170 a.a. Molecular weight: 18916.04 Da Isoelectric Point: 5.9314
>NTDB_id=295378 DKY63_RS16775 WP_110965122.1 3601312..3601824(-) (ssb) [Pseudomonas putida strain JBC17]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQGGGNNYQQSAPRQQAPRPQQSAPQQRPAPQQAAPQPAPD
FDSFDDDIPF
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQGGGNNYQQSAPRQQAPRPQQSAPQQRPAPQQAAPQPAPD
FDSFDDDIPF
Nucleotide
Download Length: 513 bp
>NTDB_id=295378 DKY63_RS16775 WP_110965122.1 3601312..3601824(-) (ssb) [Pseudomonas putida strain JBC17]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTAGGCACTTGCGGCCAGGATCCTGAAGTTCGTTACCTGCCGAACGGCAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAATGGACCGACAAGCAAACCGGTCAGAAAGTCGAAAAGACCGAAT
GGCACCGCGTATCGATGTTCGGCAAAGTGGCGGAAATCGCCGGCGAATACCTGCGTAAAGGTTCGCAAGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACCGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAACAGGGCGACCAACAAGGCGGTGGCAACAACTACCAGCAATCCGCGCCACGCC
AGCAGGCTCCTCGCCCGCAGCAGTCGGCACCGCAGCAGCGTCCAGCGCCACAACAGGCCGCTCCGCAGCCAGCTCCGGAT
TTCGACAGCTTTGATGACGATATCCCGTTCTAA
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTAGGCACTTGCGGCCAGGATCCTGAAGTTCGTTACCTGCCGAACGGCAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAATGGACCGACAAGCAAACCGGTCAGAAAGTCGAAAAGACCGAAT
GGCACCGCGTATCGATGTTCGGCAAAGTGGCGGAAATCGCCGGCGAATACCTGCGTAAAGGTTCGCAAGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACCGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAACAGGGCGACCAACAAGGCGGTGGCAACAACTACCAGCAATCCGCGCCACGCC
AGCAGGCTCCTCGCCCGCAGCAGTCGGCACCGCAGCAGCGTCCAGCGCCACAACAGGCCGCTCCGCAGCCAGCTCCGGAT
TTCGACAGCTTTGATGACGATATCCCGTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
58.564 |
100 |
0.624 |
| ssb | Glaesserella parasuis strain SC1401 |
47.619 |
100 |
0.529 |
| ssb | Neisseria meningitidis MC58 |
46.667 |
100 |
0.494 |
| ssb | Neisseria gonorrhoeae MS11 |
47.727 |
100 |
0.494 |