Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DMC16_RS07610 Genome accession   NZ_CP029686
Coordinates   1476503..1477099 (-) Length   198 a.a.
NCBI ID   WP_003568462.1    Uniprot ID   A0A0C9PXZ6
Organism   Lacticaseibacillus paracasei strain Lpc10     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1471503..1482099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DMC16_RS07580 (DMC16_07575) - 1471569..1471964 (+) 396 WP_003659007.1 hypothetical protein -
  DMC16_RS07585 (DMC16_07580) - 1472361..1472954 (+) 594 WP_003572821.1 TMEM175 family protein -
  DMC16_RS07590 (DMC16_07585) - 1473027..1473221 (-) 195 WP_003568474.1 hypothetical protein -
  DMC16_RS07595 (DMC16_07590) cydB 1473248..1474267 (-) 1020 WP_003568540.1 cytochrome d ubiquinol oxidase subunit II -
  DMC16_RS07600 (DMC16_07595) - 1474260..1475738 (-) 1479 WP_003568469.1 cytochrome ubiquinol oxidase subunit I -
  DMC16_RS07605 (DMC16_07600) rpsR 1476180..1476416 (-) 237 WP_003568467.1 30S ribosomal protein S18 -
  DMC16_RS07610 (DMC16_07605) ssb 1476503..1477099 (-) 597 WP_003568462.1 single-stranded DNA-binding protein Machinery gene
  DMC16_RS07615 (DMC16_07610) rpsF 1477130..1477426 (-) 297 WP_003568460.1 30S ribosomal protein S6 -
  DMC16_RS07620 (DMC16_07615) ssb 1477554..1477985 (-) 432 WP_003568458.1 single-stranded DNA-binding protein -
  DMC16_RS07625 (DMC16_07620) deoC 1478168..1478872 (+) 705 WP_003568456.1 deoxyribose-phosphate aldolase -
  DMC16_RS07630 (DMC16_07625) gyrA 1478977..1481598 (-) 2622 WP_003581640.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21138.87 Da        Isoelectric Point: 4.9056

>NTDB_id=295299 DMC16_RS07610 WP_003568462.1 1476503..1477099(-) (ssb) [Lacticaseibacillus paracasei strain Lpc10]
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSMVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQPQNPPSFGSQGAPNNASSSNPGQ
NPAASQNQGGNSAANPANPDPFANNGKPIDISDDDLPF

Nucleotide


Download         Length: 597 bp        

>NTDB_id=295299 DMC16_RS07610 WP_003568462.1 1476503..1477099(-) (ssb) [Lacticaseibacillus paracasei strain Lpc10]
ATGCTTAACAGTGTTGCATTGACAGGTCGATTAACCAGAGATGTTGATTTGCGTTACACGCAAAGTGGCACGGCTGTCGG
TTCTTTCACGCTGGCCGTTGACCGCCAGTTCCGCAGTGCAAACGGCGAACGTGAAACTGACTTCATCAATTGTGTGATCT
GGCGTAAGTCTGCAGAGAACTTTGCAAACTTCACCAAAAAAGGATCTATGGTTGGAGTTGAAGGCCATATCCAAACGCGT
ACGTATGATAACGCGCAAGGACAAAAGGTCTATGTGACCGAAGTCGTCGTTGAAAACTTTGCGTTGCTGGAATCCCGGGC
AACGACTCAACAGCGGCCGTCCGAACCGGCAAATCCAGCTGGCCAAGGTAATCAGAACTATGGCGGCGGGCAGCAGTTTG
GCAATAACCAACCGCAGAATCCGCCAAGTTTTGGTTCACAAGGCGCCCCGAACAATGCATCATCATCGAATCCGGGTCAA
AATCCGGCAGCAAGTCAGAACCAAGGAGGCAACTCCGCGGCTAACCCTGCTAATCCCGATCCGTTTGCTAATAATGGCAA
GCCGATCGACATTTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0C9PXZ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.296

100

0.596
  ssbA Bacillus subtilis subsp. subtilis str. 168

48.485

100

0.485

Multiple sequence alignment