Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   CSB71_RS07735 Genome accession   NZ_CP029680
Coordinates   1389488..1389958 (-) Length   156 a.a.
NCBI ID   WP_031811160.1    Uniprot ID   -
Organism   Staphylococcus aureus strain AR_0215     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1356530..1400125 1389488..1389958 within 0


Gene organization within MGE regions


Location: 1356530..1400125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSB71_RS07500 (CSB71_1348) - 1356530..1356715 (-) 186 WP_001286805.1 hypothetical protein -
  CSB71_RS07505 - 1356717..1356827 (-) 111 WP_000139423.1 hypothetical protein -
  CSB71_RS07510 (CSB71_1349) - 1356898..1357050 (-) 153 WP_001788502.1 hypothetical protein -
  CSB71_RS07515 (CSB71_1350) - 1357425..1357982 (+) 558 WP_001035620.1 DUF4888 domain-containing protein -
  CSB71_RS07520 (CSB71_1351) - 1358042..1359454 (-) 1413 WP_001141517.1 N-acetylmuramoyl-L-alanine amidase -
  CSB71_RS07525 (CSB71_1352) - 1359441..1359716 (-) 276 WP_000351119.1 phage holin -
  CSB71_RS07530 (CSB71_1353) - 1359772..1360167 (-) 396 WP_000398868.1 hypothetical protein -
  CSB71_RS07535 (CSB71_1354) - 1360173..1361411 (-) 1239 WP_000276662.1 BppU family phage baseplate upper protein -
  CSB71_RS07540 (CSB71_1355) - 1361424..1363316 (-) 1893 WP_110179691.1 glucosaminidase domain-containing protein -
  CSB71_RS07545 (CSB71_1356) - 1363443..1363811 (-) 369 WP_102947779.1 hypothetical protein -
  CSB71_RS07550 (CSB71_1357) - 1363896..1364051 (-) 156 WP_031766783.1 XkdX family protein -
  CSB71_RS07555 (CSB71_1358) - 1364044..1364430 (-) 387 WP_000705912.1 DUF2977 domain-containing protein -
  CSB71_RS07560 (CSB71_1359) - 1364430..1366253 (-) 1824 WP_000259596.1 phage baseplate upper protein -
  CSB71_RS07565 (CSB71_1360) - 1366253..1368163 (-) 1911 WP_000066423.1 hypothetical protein -
  CSB71_RS07570 (CSB71_1361) - 1368178..1370079 (-) 1902 WP_001599106.1 SGNH/GDSL hydrolase family protein -
  CSB71_RS07575 (CSB71_1362) - 1370088..1371035 (-) 948 WP_001557971.1 phage tail family protein -
  CSB71_RS07580 (CSB71_1363) - 1371048..1374512 (-) 3465 WP_000141470.1 hypothetical protein -
  CSB71_RS07585 (CSB71_1364) - 1374529..1374873 (-) 345 WP_000105584.1 hypothetical protein -
  CSB71_RS07590 (CSB71_1365) - 1374903..1375268 (-) 366 WP_001100161.1 tail assembly chaperone -
  CSB71_RS07595 (CSB71_1366) - 1375330..1375911 (-) 582 WP_000002577.1 phage major tail protein, TP901-1 family -
  CSB71_RS07600 (CSB71_1367) - 1375930..1376313 (-) 384 WP_000188643.1 hypothetical protein -
  CSB71_RS07605 (CSB71_1368) - 1376325..1376672 (-) 348 WP_001017815.1 HK97-gp10 family putative phage morphogenesis protein -
  CSB71_RS07610 - 1376672..1376974 (-) 303 WP_001268312.1 hypothetical protein -
  CSB71_RS07615 (CSB71_1369) - 1376971..1377303 (-) 333 WP_000208960.1 phage head-tail connector protein -
  CSB71_RS07620 (CSB71_1370) - 1377312..1377599 (-) 288 WP_001114086.1 hypothetical protein -
  CSB71_RS07625 (CSB71_1371) - 1377621..1378595 (-) 975 WP_000438511.1 phage major capsid protein -
  CSB71_RS07630 (CSB71_1372) - 1378609..1379229 (-) 621 WP_000392151.1 DUF4355 domain-containing protein -
  CSB71_RS15700 - 1379217..1379310 (-) 94 Protein_1379 hypothetical protein -
  CSB71_RS07635 (CSB71_1373) - 1379338..1379508 (-) 171 WP_000072208.1 hypothetical protein -
  CSB71_RS07640 (CSB71_1374) - 1379581..1380576 (-) 996 WP_001133044.1 minor capsid protein -
  CSB71_RS07645 (CSB71_1375) - 1380583..1382121 (-) 1539 WP_031766723.1 phage portal protein -
  CSB71_RS07650 (CSB71_1376) - 1382132..1383409 (-) 1278 WP_000169945.1 PBSX family phage terminase large subunit -
  CSB71_RS07655 - 1383396..1383837 (-) 442 Protein_1384 terminase small subunit -
  CSB71_RS07660 (CSB71_1379) - 1384024..1384446 (-) 423 WP_000162696.1 RinA family phage transcriptional activator -
  CSB71_RS07665 (CSB71_1380) - 1384470..1384616 (-) 147 WP_000990001.1 hypothetical protein -
  CSB71_RS07670 (CSB71_1381) - 1384617..1384790 (-) 174 WP_017804565.1 transcriptional activator RinB -
  CSB71_RS07675 (CSB71_1382) - 1384787..1385173 (-) 387 WP_000592201.1 hypothetical protein -
  CSB71_RS07680 (CSB71_1383) - 1385170..1385376 (-) 207 WP_000195803.1 DUF1381 domain-containing protein -
  CSB71_RS07685 (CSB71_1384) - 1385373..1385618 (-) 246 WP_001282074.1 hypothetical protein -
  CSB71_RS07690 (CSB71_1385) - 1385655..1386161 (-) 507 WP_001061842.1 dUTPase -
  CSB71_RS15585 (CSB71_1386) - 1386176..1386337 (-) 162 WP_000889682.1 hypothetical protein -
  CSB71_RS07695 (CSB71_1387) - 1386338..1386592 (-) 255 WP_223289771.1 hypothetical protein -
  CSB71_RS15590 - 1386621..1386794 (-) 174 WP_000028424.1 hypothetical protein -
  CSB71_RS07700 (CSB71_1388) - 1386784..1387035 (-) 252 WP_110179692.1 DUF1024 family protein -
  CSB71_RS07705 (CSB71_1389) - 1387050..1387298 (-) 249 WP_000178987.1 SAV1978 family virulence-associated passenger protein -
  CSB71_RS07710 (CSB71_1390) - 1387295..1387552 (-) 258 WP_000111491.1 DUF3310 domain-containing protein -
  CSB71_RS07715 (CSB71_1391) - 1387552..1387923 (-) 372 WP_000101279.1 SA1788 family PVL leukocidin-associated protein -
  CSB71_RS07720 (CSB71_1392) - 1387936..1388340 (-) 405 WP_000401969.1 RusA family crossover junction endodeoxyribonuclease -
  CSB71_RS07725 (CSB71_1393) - 1388349..1388567 (-) 219 WP_000338528.1 hypothetical protein -
  CSB71_RS07730 - 1388574..1389458 (-) 885 WP_000148301.1 DnaD domain protein -
  CSB71_RS07735 (CSB71_1395) ssbA 1389488..1389958 (-) 471 WP_031811160.1 single-stranded DNA-binding protein Machinery gene
  CSB71_RS07740 (CSB71_1396) - 1389959..1390576 (-) 618 WP_077517322.1 MBL fold metallo-hydrolase -
  CSB71_RS07745 (CSB71_1397) - 1390657..1391577 (-) 921 WP_000138475.1 recombinase RecT -
  CSB71_RS07750 (CSB71_1398) - 1391579..1393522 (-) 1944 WP_110179693.1 AAA family ATPase -
  CSB71_RS07755 - 1393531..1393794 (-) 264 WP_001205732.1 hypothetical protein -
  CSB71_RS07760 (CSB71_1399) - 1393803..1394063 (-) 261 WP_000291075.1 DUF1108 family protein -
  CSB71_RS07765 (CSB71_1400) - 1394157..1394477 (-) 321 WP_000219666.1 hypothetical protein -
  CSB71_RS07770 (CSB71_1401) - 1394478..1394645 (-) 168 WP_001285957.1 DUF1270 domain-containing protein -
  CSB71_RS07775 (CSB71_1403) - 1394825..1395055 (+) 231 WP_000395457.1 hypothetical protein -
  CSB71_RS15595 (CSB71_1404) - 1395030..1395206 (-) 177 WP_001094935.1 hypothetical protein -
  CSB71_RS07780 (CSB71_1405) - 1395259..1395453 (-) 195 WP_000390105.1 hypothetical protein -
  CSB71_RS07785 (CSB71_1406) - 1395470..1396258 (-) 789 WP_001148571.1 phage antirepressor KilAC domain-containing protein -
  CSB71_RS07790 (CSB71_1407) - 1396415..1396723 (-) 309 WP_001153965.1 hypothetical protein -
  CSB71_RS07795 (CSB71_1408) - 1396738..1396956 (-) 219 WP_001198673.1 helix-turn-helix transcriptional regulator -
  CSB71_RS07800 (CSB71_1409) - 1397098..1397817 (+) 720 WP_000358220.1 XRE family transcriptional regulator -
  CSB71_RS07805 (CSB71_1410) - 1397853..1398533 (+) 681 WP_000392109.1 type II toxin-antitoxin system PemK/MazF family toxin -
  CSB71_RS07810 (CSB71_1411) - 1398740..1400125 (+) 1386 WP_110179694.1 recombinase family protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17713.63 Da        Isoelectric Point: 5.2672

>NTDB_id=295147 CSB71_RS07735 WP_031811160.1 1389488..1389958(-) (ssbA) [Staphylococcus aureus strain AR_0215]
MINRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLTGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANVPIEIDDNDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=295147 CSB71_RS07735 WP_031811160.1 1389488..1389958(-) (ssbA) [Staphylococcus aureus strain AR_0215]
ATGATAAATAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGGACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGACGGGCGTAGATGGTAGGTTACAAACGCGG
AATTATGAAAATAAGGAAGGTCAACGTGTATATGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATACCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGTTCCGATTGAAATAGATGACAATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.802

100

0.622
  ssb Latilactobacillus sakei subsp. sakei 23K

51.176

100

0.558
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

67.949

0.404
  ssb Glaesserella parasuis strain SC1401

32.203

100

0.365

Multiple sequence alignment