Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | CSB84_RS11395 | Genome accession | NZ_CP029663 |
| Coordinates | 2120669..2121139 (-) | Length | 156 a.a. |
| NCBI ID | WP_000934759.1 | Uniprot ID | A0A2I7Y8V1 |
| Organism | Staphylococcus aureus strain AR_0228 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2091688..2145207 | 2120669..2121139 | within | 0 |
Gene organization within MGE regions
Location: 2091688..2145207
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CSB84_RS11180 (CSB84_2050) | scn | 2091688..2092038 (-) | 351 | WP_000702263.1 | complement inhibitor SCIN-A | - |
| CSB84_RS11185 (CSB84_2051) | - | 2092723..2093172 (+) | 450 | WP_000727649.1 | chemotaxis-inhibiting protein CHIPS | - |
| CSB84_RS11190 (CSB84_2052) | - | 2093267..2093602 (-) | 336 | Protein_2022 | SH3 domain-containing protein | - |
| CSB84_RS11205 (CSB84_2053) | sak | 2094252..2094743 (-) | 492 | WP_000919350.1 | staphylokinase | - |
| CSB84_RS11210 (CSB84_2054) | - | 2094934..2095689 (-) | 756 | WP_000861038.1 | CHAP domain-containing protein | - |
| CSB84_RS11215 (CSB84_2055) | - | 2095701..2095955 (-) | 255 | WP_000611512.1 | phage holin | - |
| CSB84_RS11220 | - | 2096007..2096114 (+) | 108 | WP_001791821.1 | hypothetical protein | - |
| CSB84_RS11225 (CSB84_2056) | pepG1 | 2096167..2096301 (-) | 135 | WP_000226108.1 | type I toxin-antitoxin system toxin PepG1 | - |
| CSB84_RS11230 (CSB84_2057) | - | 2096493..2096789 (-) | 297 | WP_000539688.1 | DUF2951 domain-containing protein | - |
| CSB84_RS11235 (CSB84_2058) | - | 2096847..2097134 (-) | 288 | WP_001040261.1 | hypothetical protein | - |
| CSB84_RS11240 (CSB84_2059) | - | 2097181..2097333 (-) | 153 | WP_001153681.1 | hypothetical protein | - |
| CSB84_RS11245 (CSB84_2060) | - | 2097323..2101108 (-) | 3786 | WP_000582154.1 | phage tail spike protein | - |
| CSB84_RS11250 (CSB84_2061) | - | 2101124..2102608 (-) | 1485 | WP_000567396.1 | phage tail domain-containing protein | - |
| CSB84_RS11255 (CSB84_2062) | - | 2102605..2107137 (-) | 4533 | WP_001557459.1 | phage tail tape measure protein | - |
| CSB84_RS15440 (CSB84_2063) | - | 2107194..2107331 (-) | 138 | WP_001549167.1 | hypothetical protein | - |
| CSB84_RS11260 (CSB84_2064) | - | 2107382..2107732 (-) | 351 | WP_001096355.1 | hypothetical protein | - |
| CSB84_RS11265 (CSB84_2065) | - | 2107782..2108012 (-) | 231 | Protein_2036 | Ig-like domain-containing protein | - |
| CSB84_RS11270 (CSB84_2066) | - | 2108048..2108692 (-) | 645 | WP_000985142.1 | major tail protein | - |
| CSB84_RS11275 (CSB84_2067) | - | 2108693..2109100 (-) | 408 | WP_000565498.1 | hypothetical protein | - |
| CSB84_RS11280 (CSB84_2068) | - | 2109097..2109501 (-) | 405 | WP_000114341.1 | HK97 gp10 family phage protein | - |
| CSB84_RS11285 (CSB84_2069) | - | 2109498..2109860 (-) | 363 | WP_000755150.1 | head-tail adaptor protein | - |
| CSB84_RS11290 (CSB84_2070) | - | 2109844..2110128 (-) | 285 | WP_000150936.1 | phage head-tail adapter protein | - |
| CSB84_RS11295 (CSB84_2071) | - | 2110118..2110402 (-) | 285 | WP_000238241.1 | hypothetical protein | - |
| CSB84_RS11300 (CSB84_2072) | - | 2110422..2111567 (-) | 1146 | WP_000154568.1 | phage major capsid protein | - |
| CSB84_RS11305 (CSB84_2073) | - | 2111590..2112327 (-) | 738 | WP_000861911.1 | head maturation protease, ClpP-related | - |
| CSB84_RS11310 (CSB84_2074) | - | 2112311..2113474 (-) | 1164 | WP_000025268.1 | phage portal protein | - |
| CSB84_RS11315 (CSB84_2075) | - | 2113490..2115151 (-) | 1662 | WP_000625096.1 | terminase large subunit | - |
| CSB84_RS11320 (CSB84_2076) | - | 2115148..2115492 (-) | 345 | WP_000402904.1 | hypothetical protein | - |
| CSB84_RS11325 (CSB84_2077) | - | 2115623..2115922 (-) | 300 | WP_000988332.1 | HNH endonuclease | - |
| CSB84_RS11330 (CSB84_2078) | - | 2116154..2116570 (-) | 417 | WP_000590122.1 | hypothetical protein | - |
| CSB84_RS11335 (CSB84_2079) | - | 2116598..2116798 (-) | 201 | WP_001557462.1 | DUF1514 family protein | - |
| CSB84_RS11340 (CSB84_2080) | - | 2116798..2116947 (-) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| CSB84_RS11345 (CSB84_2081) | - | 2116944..2117150 (-) | 207 | WP_000195784.1 | DUF1381 domain-containing protein | - |
| CSB84_RS11350 (CSB84_2082) | - | 2117147..2117392 (-) | 246 | WP_001282077.1 | hypothetical protein | - |
| CSB84_RS11355 (CSB84_2083) | - | 2117429..2117965 (-) | 537 | WP_000185693.1 | dUTPase | - |
| CSB84_RS11360 (CSB84_2084) | - | 2117962..2118207 (-) | 246 | WP_001065108.1 | DUF1024 family protein | - |
| CSB84_RS11365 (CSB84_2085) | - | 2118222..2118470 (-) | 249 | WP_000178987.1 | SAV1978 family virulence-associated passenger protein | - |
| CSB84_RS11370 (CSB84_2086) | - | 2118467..2118724 (-) | 258 | WP_000111491.1 | DUF3310 domain-containing protein | - |
| CSB84_RS11375 (CSB84_2087) | - | 2118724..2119095 (-) | 372 | WP_000101279.1 | SA1788 family PVL leukocidin-associated protein | - |
| CSB84_RS11380 (CSB84_2088) | - | 2119108..2119512 (-) | 405 | WP_000401969.1 | RusA family crossover junction endodeoxyribonuclease | - |
| CSB84_RS11385 (CSB84_2089) | - | 2119521..2119739 (-) | 219 | WP_000338528.1 | hypothetical protein | - |
| CSB84_RS11390 (CSB84_2090) | - | 2119746..2120639 (-) | 894 | WP_000148333.1 | DnaD domain-containing protein | - |
| CSB84_RS11395 (CSB84_2091) | ssbA | 2120669..2121139 (-) | 471 | WP_000934759.1 | single-stranded DNA-binding protein | Machinery gene |
| CSB84_RS11400 (CSB84_2092) | - | 2121140..2121757 (-) | 618 | WP_064135358.1 | MBL fold metallo-hydrolase | - |
| CSB84_RS11405 (CSB84_2093) | - | 2121838..2122758 (-) | 921 | WP_000180600.1 | recombinase RecT | - |
| CSB84_RS11410 (CSB84_2094) | - | 2122760..2124703 (-) | 1944 | WP_000700554.1 | AAA family ATPase | - |
| CSB84_RS11415 | - | 2124712..2124975 (-) | 264 | WP_001205732.1 | hypothetical protein | - |
| CSB84_RS11420 (CSB84_2095) | - | 2124984..2125244 (-) | 261 | WP_000291510.1 | DUF1108 family protein | - |
| CSB84_RS11425 (CSB84_2096) | - | 2125249..2125551 (-) | 303 | WP_000165371.1 | DUF2482 family protein | - |
| CSB84_RS11430 (CSB84_2097) | - | 2125646..2125807 (-) | 162 | WP_000048129.1 | DUF1270 family protein | - |
| CSB84_RS11435 (CSB84_2098) | - | 2125804..2126127 (-) | 324 | WP_001120201.1 | DUF771 domain-containing protein | - |
| CSB84_RS11440 (CSB84_2099) | - | 2126182..2126562 (+) | 381 | WP_000762521.1 | DUF2513 domain-containing protein | - |
| CSB84_RS11445 (CSB84_2100) | - | 2126549..2126746 (-) | 198 | WP_001148862.1 | hypothetical protein | - |
| CSB84_RS11450 (CSB84_2101) | - | 2126762..2127511 (-) | 750 | WP_001148338.1 | phage antirepressor KilAC domain-containing protein | - |
| CSB84_RS11455 (CSB84_2102) | - | 2127568..2127777 (+) | 210 | WP_000772137.1 | hypothetical protein | - |
| CSB84_RS11460 (CSB84_2103) | - | 2127770..2127910 (-) | 141 | WP_000939495.1 | hypothetical protein | - |
| CSB84_RS11465 (CSB84_2104) | - | 2127925..2128368 (-) | 444 | WP_000435360.1 | hypothetical protein | - |
| CSB84_RS11470 | - | 2128381..2128623 (-) | 243 | WP_000639923.1 | DUF739 family protein | - |
| CSB84_RS11475 (CSB84_2105) | - | 2128787..2129503 (+) | 717 | WP_001083975.1 | LexA family transcriptional regulator | - |
| CSB84_RS11480 (CSB84_2106) | - | 2129515..2130369 (+) | 855 | WP_001557601.1 | HIRAN domain-containing protein | - |
| CSB84_RS15445 (CSB84_2107) | - | 2130443..2130589 (+) | 147 | WP_000345949.1 | hypothetical protein | - |
| CSB84_RS11485 (CSB84_2108) | - | 2130586..2130771 (+) | 186 | WP_000109189.1 | hypothetical protein | - |
| CSB84_RS11490 (CSB84_2109) | - | 2130842..2131024 (+) | 183 | WP_000705245.1 | hypothetical protein | - |
| CSB84_RS11495 (CSB84_2110) | - | 2131103..2131816 (+) | 714 | WP_001549185.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| CSB84_RS11500 (CSB84_2111) | - | 2132007..2133044 (+) | 1038 | WP_000857200.1 | site-specific integrase | - |
| CSB84_RS11505 (CSB84_2112) | sph | 2133095..2133925 (+) | 831 | Protein_2085 | sphingomyelin phosphodiesterase | - |
| CSB84_RS11510 (CSB84_2113) | lukG | 2134163..2135179 (-) | 1017 | WP_000595392.1 | bi-component leukocidin LukGH subunit G | - |
| CSB84_RS11515 (CSB84_2114) | lukH | 2135201..2136256 (-) | 1056 | WP_000791411.1 | bi-component leukocidin LukGH subunit H | - |
| CSB84_RS11520 (CSB84_2115) | - | 2136692..2137915 (+) | 1224 | WP_000206625.1 | ArgE/DapE family deacylase | - |
| CSB84_RS11525 (CSB84_2116) | - | 2138359..2139666 (+) | 1308 | WP_001045079.1 | TrkH family potassium uptake protein | - |
| CSB84_RS11535 (CSB84_2117) | groL | 2140206..2141822 (-) | 1617 | WP_000240642.1 | chaperonin GroEL | - |
| CSB84_RS11540 (CSB84_2118) | groES | 2141898..2142182 (-) | 285 | WP_000917289.1 | co-chaperone GroES | - |
| CSB84_RS11545 (CSB84_2119) | mroQ | 2142357..2143100 (+) | 744 | WP_000197635.1 | CPBP family intramembrane glutamic endopeptidase MroQ | - |
| CSB84_RS11550 (CSB84_2120) | - | 2143125..2144384 (-) | 1260 | WP_000120297.1 | SdrH family protein | - |
| CSB84_RS11555 (CSB84_2121) | - | 2144581..2145207 (+) | 627 | WP_000522386.1 | nitroreductase family protein | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17641.52 Da Isoelectric Point: 5.2672
>NTDB_id=294815 CSB84_RS11395 WP_000934759.1 2120669..2121139(-) (ssbA) [Staphylococcus aureus strain AR_0228]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=294815 CSB84_RS11395 WP_000934759.1 2120669..2121139(-) (ssbA) [Staphylococcus aureus strain AR_0228]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
100 |
0.635 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |