Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | CSC53_RS11220 | Genome accession | NZ_CP029657 |
| Coordinates | 2119674..2120144 (-) | Length | 156 a.a. |
| NCBI ID | WP_000934759.1 | Uniprot ID | A0A2I7Y8V1 |
| Organism | Staphylococcus aureus strain AR_0468 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2090693..2144212 | 2119674..2120144 | within | 0 |
Gene organization within MGE regions
Location: 2090693..2144212
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CSC53_RS11005 (CSC53_2003) | scn | 2090693..2091043 (-) | 351 | WP_000702263.1 | complement inhibitor SCIN-A | - |
| CSC53_RS11010 (CSC53_2004) | - | 2091728..2092177 (+) | 450 | WP_000727649.1 | chemotaxis-inhibiting protein CHIPS | - |
| CSC53_RS11015 (CSC53_2005) | - | 2092272..2092607 (-) | 336 | Protein_2019 | SH3 domain-containing protein | - |
| CSC53_RS11030 (CSC53_2006) | sak | 2093257..2093748 (-) | 492 | WP_000919350.1 | staphylokinase | - |
| CSC53_RS11035 (CSC53_2007) | - | 2093939..2094694 (-) | 756 | WP_000861038.1 | CHAP domain-containing protein | - |
| CSC53_RS11040 (CSC53_2008) | - | 2094706..2094960 (-) | 255 | WP_000611512.1 | phage holin | - |
| CSC53_RS11045 | - | 2095012..2095119 (+) | 108 | WP_001791821.1 | hypothetical protein | - |
| CSC53_RS11050 | pepG1 | 2095172..2095306 (-) | 135 | WP_000226108.1 | type I toxin-antitoxin system toxin PepG1 | - |
| CSC53_RS11055 (CSC53_2009) | - | 2095498..2095794 (-) | 297 | WP_000539688.1 | DUF2951 domain-containing protein | - |
| CSC53_RS11060 (CSC53_2010) | - | 2095852..2096139 (-) | 288 | WP_001040261.1 | hypothetical protein | - |
| CSC53_RS11065 (CSC53_2011) | - | 2096186..2096338 (-) | 153 | WP_031864465.1 | hypothetical protein | - |
| CSC53_RS11070 (CSC53_2012) | - | 2096328..2100113 (-) | 3786 | WP_000582154.1 | phage tail spike protein | - |
| CSC53_RS11075 (CSC53_2013) | - | 2100129..2101613 (-) | 1485 | WP_000567396.1 | phage tail domain-containing protein | - |
| CSC53_RS11080 (CSC53_2014) | - | 2101610..2106142 (-) | 4533 | WP_001557459.1 | phage tail tape measure protein | - |
| CSC53_RS15570 (CSC53_2015) | - | 2106199..2106336 (-) | 138 | WP_001549167.1 | hypothetical protein | - |
| CSC53_RS11085 (CSC53_2016) | - | 2106387..2106737 (-) | 351 | WP_001096355.1 | hypothetical protein | - |
| CSC53_RS11090 (CSC53_2017) | - | 2106787..2107017 (-) | 231 | Protein_2033 | Ig-like domain-containing protein | - |
| CSC53_RS11095 (CSC53_2018) | - | 2107053..2107697 (-) | 645 | WP_000985142.1 | major tail protein | - |
| CSC53_RS11100 (CSC53_2019) | - | 2107698..2108105 (-) | 408 | WP_000565498.1 | hypothetical protein | - |
| CSC53_RS11105 (CSC53_2020) | - | 2108102..2108506 (-) | 405 | WP_000114341.1 | HK97 gp10 family phage protein | - |
| CSC53_RS11110 (CSC53_2021) | - | 2108503..2108865 (-) | 363 | WP_000755150.1 | head-tail adaptor protein | - |
| CSC53_RS11115 (CSC53_2022) | - | 2108849..2109133 (-) | 285 | WP_000150936.1 | phage head-tail adapter protein | - |
| CSC53_RS11120 (CSC53_2023) | - | 2109123..2109407 (-) | 285 | WP_000238241.1 | hypothetical protein | - |
| CSC53_RS11125 (CSC53_2024) | - | 2109427..2110572 (-) | 1146 | WP_000154568.1 | phage major capsid protein | - |
| CSC53_RS11130 (CSC53_2025) | - | 2110595..2111332 (-) | 738 | WP_000861911.1 | head maturation protease, ClpP-related | - |
| CSC53_RS11135 (CSC53_2026) | - | 2111316..2112479 (-) | 1164 | WP_000025268.1 | phage portal protein | - |
| CSC53_RS11140 (CSC53_2027) | - | 2112495..2114156 (-) | 1662 | WP_000625096.1 | terminase large subunit | - |
| CSC53_RS11145 (CSC53_2028) | - | 2114153..2114497 (-) | 345 | WP_000402904.1 | hypothetical protein | - |
| CSC53_RS11150 (CSC53_2029) | - | 2114628..2114927 (-) | 300 | WP_000988332.1 | HNH endonuclease | - |
| CSC53_RS11155 (CSC53_2030) | - | 2115159..2115575 (-) | 417 | WP_000590122.1 | hypothetical protein | - |
| CSC53_RS11160 (CSC53_2031) | - | 2115603..2115803 (-) | 201 | WP_001557462.1 | DUF1514 family protein | - |
| CSC53_RS11165 (CSC53_2032) | - | 2115803..2115952 (-) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| CSC53_RS11170 (CSC53_2033) | - | 2115949..2116155 (-) | 207 | WP_000195784.1 | DUF1381 domain-containing protein | - |
| CSC53_RS11175 (CSC53_2034) | - | 2116152..2116397 (-) | 246 | WP_001282077.1 | hypothetical protein | - |
| CSC53_RS11180 (CSC53_2035) | - | 2116434..2116970 (-) | 537 | WP_000185693.1 | dUTPase | - |
| CSC53_RS11185 (CSC53_2036) | - | 2116967..2117212 (-) | 246 | WP_001065108.1 | DUF1024 family protein | - |
| CSC53_RS11190 (CSC53_2037) | - | 2117227..2117475 (-) | 249 | WP_000178987.1 | SAV1978 family virulence-associated passenger protein | - |
| CSC53_RS11195 (CSC53_2038) | - | 2117472..2117729 (-) | 258 | WP_000111491.1 | DUF3310 domain-containing protein | - |
| CSC53_RS11200 (CSC53_2039) | - | 2117729..2118100 (-) | 372 | WP_031864466.1 | SA1788 family PVL leukocidin-associated protein | - |
| CSC53_RS11205 (CSC53_2040) | - | 2118113..2118517 (-) | 405 | WP_000401969.1 | RusA family crossover junction endodeoxyribonuclease | - |
| CSC53_RS11210 (CSC53_2041) | - | 2118526..2118744 (-) | 219 | WP_000338528.1 | hypothetical protein | - |
| CSC53_RS11215 (CSC53_2042) | - | 2118751..2119644 (-) | 894 | WP_000148333.1 | DnaD domain-containing protein | - |
| CSC53_RS11220 (CSC53_2043) | ssbA | 2119674..2120144 (-) | 471 | WP_000934759.1 | single-stranded DNA-binding protein | Machinery gene |
| CSC53_RS11225 (CSC53_2044) | - | 2120145..2120762 (-) | 618 | WP_064135358.1 | MBL fold metallo-hydrolase | - |
| CSC53_RS11230 (CSC53_2045) | - | 2120843..2121763 (-) | 921 | WP_000180600.1 | recombinase RecT | - |
| CSC53_RS11235 (CSC53_2046) | - | 2121765..2123708 (-) | 1944 | WP_000700554.1 | AAA family ATPase | - |
| CSC53_RS11240 | - | 2123717..2123980 (-) | 264 | WP_001205732.1 | hypothetical protein | - |
| CSC53_RS11245 (CSC53_2047) | - | 2123989..2124249 (-) | 261 | WP_000291510.1 | DUF1108 family protein | - |
| CSC53_RS11250 (CSC53_2048) | - | 2124254..2124556 (-) | 303 | WP_000165371.1 | DUF2482 family protein | - |
| CSC53_RS11255 | - | 2124651..2124812 (-) | 162 | WP_000048129.1 | DUF1270 family protein | - |
| CSC53_RS11260 (CSC53_2049) | - | 2124809..2125132 (-) | 324 | WP_001120201.1 | DUF771 domain-containing protein | - |
| CSC53_RS11265 (CSC53_2050) | - | 2125187..2125567 (+) | 381 | WP_000762521.1 | DUF2513 domain-containing protein | - |
| CSC53_RS11270 (CSC53_2051) | - | 2125554..2125751 (-) | 198 | WP_001148862.1 | hypothetical protein | - |
| CSC53_RS11275 (CSC53_2052) | - | 2125767..2126516 (-) | 750 | WP_001148338.1 | phage antirepressor KilAC domain-containing protein | - |
| CSC53_RS11280 (CSC53_2053) | - | 2126573..2126782 (+) | 210 | WP_000772137.1 | hypothetical protein | - |
| CSC53_RS11285 (CSC53_2054) | - | 2126775..2126915 (-) | 141 | WP_000939495.1 | hypothetical protein | - |
| CSC53_RS11290 (CSC53_2055) | - | 2126930..2127373 (-) | 444 | WP_000435360.1 | hypothetical protein | - |
| CSC53_RS11295 (CSC53_2056) | - | 2127386..2127628 (-) | 243 | WP_000639923.1 | DUF739 family protein | - |
| CSC53_RS11300 (CSC53_2057) | - | 2127792..2128508 (+) | 717 | WP_001083975.1 | LexA family transcriptional regulator | - |
| CSC53_RS11305 (CSC53_2058) | - | 2128520..2129374 (+) | 855 | WP_001557601.1 | HIRAN domain-containing protein | - |
| CSC53_RS15575 (CSC53_2059) | - | 2129448..2129594 (+) | 147 | WP_000345949.1 | hypothetical protein | - |
| CSC53_RS11310 (CSC53_2060) | - | 2129591..2129776 (+) | 186 | WP_000109189.1 | hypothetical protein | - |
| CSC53_RS11315 (CSC53_2061) | - | 2129847..2130029 (+) | 183 | WP_000705245.1 | hypothetical protein | - |
| CSC53_RS11320 (CSC53_2062) | - | 2130108..2130821 (+) | 714 | WP_001549185.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| CSC53_RS11325 (CSC53_2063) | - | 2131012..2132049 (+) | 1038 | WP_000857200.1 | site-specific integrase | - |
| CSC53_RS11330 (CSC53_2064) | sph | 2132100..2132930 (+) | 831 | Protein_2082 | sphingomyelin phosphodiesterase | - |
| CSC53_RS11335 (CSC53_2065) | lukG | 2133168..2134184 (-) | 1017 | WP_000595392.1 | bi-component leukocidin LukGH subunit G | - |
| CSC53_RS11340 (CSC53_2066) | lukH | 2134206..2135261 (-) | 1056 | WP_000791411.1 | bi-component leukocidin LukGH subunit H | - |
| CSC53_RS11345 (CSC53_2067) | - | 2135697..2136920 (+) | 1224 | WP_000206625.1 | ArgE/DapE family deacylase | - |
| CSC53_RS11350 (CSC53_2068) | - | 2137364..2138671 (+) | 1308 | WP_001045079.1 | TrkH family potassium uptake protein | - |
| CSC53_RS11360 (CSC53_2069) | groL | 2139211..2140827 (-) | 1617 | WP_000240642.1 | chaperonin GroEL | - |
| CSC53_RS11365 (CSC53_2070) | groES | 2140903..2141187 (-) | 285 | WP_000917289.1 | co-chaperone GroES | - |
| CSC53_RS11370 (CSC53_2071) | mroQ | 2141362..2142105 (+) | 744 | WP_000197635.1 | CPBP family intramembrane glutamic endopeptidase MroQ | - |
| CSC53_RS11375 (CSC53_2072) | - | 2142130..2143389 (-) | 1260 | WP_000120297.1 | SdrH family protein | - |
| CSC53_RS11380 (CSC53_2073) | - | 2143586..2144212 (+) | 627 | WP_000522381.1 | nitroreductase family protein | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17641.52 Da Isoelectric Point: 5.2672
>NTDB_id=294693 CSC53_RS11220 WP_000934759.1 2119674..2120144(-) (ssbA) [Staphylococcus aureus strain AR_0468]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=294693 CSC53_RS11220 WP_000934759.1 2119674..2120144(-) (ssbA) [Staphylococcus aureus strain AR_0468]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
100 |
0.635 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |