Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | DSHI_RS08170 | Genome accession | NC_009952 |
| Coordinates | 1669410..1669916 (+) | Length | 168 a.a. |
| NCBI ID | WP_012178278.1 | Uniprot ID | A8LKY4 |
| Organism | Dinoroseobacter shibae DFL 12 = DSM 16493 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1664410..1674916
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DSHI_RS08135 (Dshi_1599) | - | 1664723..1665604 (-) | 882 | WP_012178271.1 | ABC transporter permease | - |
| DSHI_RS08140 (Dshi_1600) | - | 1665720..1666031 (-) | 312 | WP_012178272.1 | antibiotic biosynthesis monooxygenase | - |
| DSHI_RS08145 (Dshi_1601) | rpsI | 1666178..1666672 (-) | 495 | WP_012178273.1 | 30S ribosomal protein S9 | - |
| DSHI_RS08150 (Dshi_1602) | rplM | 1666677..1667135 (-) | 459 | WP_012178274.1 | 50S ribosomal protein L13 | - |
| DSHI_RS08155 (Dshi_1603) | - | 1667361..1667783 (-) | 423 | WP_012178275.1 | PaaI family thioesterase | - |
| DSHI_RS08160 (Dshi_1604) | - | 1667840..1668634 (+) | 795 | WP_012178276.1 | enoyl-CoA hydratase | - |
| DSHI_RS08165 (Dshi_1605) | - | 1668641..1669249 (-) | 609 | WP_012178277.1 | lytic transglycosylase domain-containing protein | - |
| DSHI_RS08170 (Dshi_1606) | ssb | 1669410..1669916 (+) | 507 | WP_012178278.1 | single-stranded DNA-binding protein | Machinery gene |
| DSHI_RS08175 (Dshi_1607) | - | 1669966..1671222 (-) | 1257 | WP_012178279.1 | hypothetical protein | - |
| DSHI_RS08180 (Dshi_1608) | aroB | 1671408..1672559 (-) | 1152 | WP_012178280.1 | 3-dehydroquinate synthase | - |
| DSHI_RS08185 (Dshi_1609) | - | 1672630..1673187 (-) | 558 | WP_012178281.1 | shikimate kinase | - |
| DSHI_RS22565 | - | 1673309..1673446 (+) | 138 | WP_085930398.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 168 a.a. Molecular weight: 18217.93 Da Isoelectric Point: 5.3360
>NTDB_id=29437 DSHI_RS08170 WP_012178278.1 1669410..1669916(+) (ssb) [Dinoroseobacter shibae DFL 12 = DSM 16493]
MAGSVNKVILVGNLGRDPEVRTFQNGGKVCNLRIATSENWKDRNTGERREKTEWHSVAIFSEPLARVAEQYLRKGSKVYI
EGQLETRKWQDQSGQDRYSTEVVLRPYKSELTMLDGRDGGGGGMGGGGGYVSDQSGGGGYSDDRFGGDSGNAPAGGGRHN
DLDDEIPF
MAGSVNKVILVGNLGRDPEVRTFQNGGKVCNLRIATSENWKDRNTGERREKTEWHSVAIFSEPLARVAEQYLRKGSKVYI
EGQLETRKWQDQSGQDRYSTEVVLRPYKSELTMLDGRDGGGGGMGGGGGYVSDQSGGGGYSDDRFGGDSGNAPAGGGRHN
DLDDEIPF
Nucleotide
Download Length: 507 bp
>NTDB_id=29437 DSHI_RS08170 WP_012178278.1 1669410..1669916(+) (ssb) [Dinoroseobacter shibae DFL 12 = DSM 16493]
ATGGCAGGTTCGGTCAACAAGGTCATTTTGGTCGGAAATCTCGGGCGCGACCCGGAAGTGCGCACGTTCCAGAATGGCGG
CAAGGTGTGCAATCTGCGCATTGCCACCTCCGAGAACTGGAAGGATCGCAACACCGGCGAGCGGCGCGAGAAGACAGAGT
GGCACTCCGTCGCGATCTTCTCGGAACCGCTCGCGCGGGTGGCAGAACAGTATCTGCGCAAAGGCTCCAAGGTTTATATC
GAGGGCCAGTTGGAAACCCGGAAATGGCAGGACCAGTCTGGCCAGGACCGTTACTCCACCGAGGTCGTTCTGCGCCCCTA
CAAGTCCGAACTGACCATGCTGGACGGTCGCGACGGCGGCGGCGGTGGCATGGGCGGTGGTGGCGGCTACGTCTCGGACC
AGTCCGGCGGCGGCGGATACAGCGATGACCGGTTCGGCGGCGACAGCGGCAACGCGCCTGCGGGAGGCGGGCGCCATAAC
GATCTCGACGACGAGATCCCGTTCTGA
ATGGCAGGTTCGGTCAACAAGGTCATTTTGGTCGGAAATCTCGGGCGCGACCCGGAAGTGCGCACGTTCCAGAATGGCGG
CAAGGTGTGCAATCTGCGCATTGCCACCTCCGAGAACTGGAAGGATCGCAACACCGGCGAGCGGCGCGAGAAGACAGAGT
GGCACTCCGTCGCGATCTTCTCGGAACCGCTCGCGCGGGTGGCAGAACAGTATCTGCGCAAAGGCTCCAAGGTTTATATC
GAGGGCCAGTTGGAAACCCGGAAATGGCAGGACCAGTCTGGCCAGGACCGTTACTCCACCGAGGTCGTTCTGCGCCCCTA
CAAGTCCGAACTGACCATGCTGGACGGTCGCGACGGCGGCGGCGGTGGCATGGGCGGTGGTGGCGGCTACGTCTCGGACC
AGTCCGGCGGCGGCGGATACAGCGATGACCGGTTCGGCGGCGACAGCGGCAACGCGCCTGCGGGAGGCGGGCGCCATAAC
GATCTCGACGACGAGATCCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
49.462 |
100 |
0.548 |
| ssb | Vibrio cholerae strain A1552 |
52.601 |
100 |
0.542 |
| ssb | Neisseria meningitidis MC58 |
41.341 |
100 |
0.44 |
| ssb | Neisseria gonorrhoeae MS11 |
41.341 |
100 |
0.44 |