Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   EQW70_RS15105 Genome accession   NZ_CP035226
Coordinates   2835555..2836250 (-) Length   231 a.a.
NCBI ID   WP_021480240.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103517     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2830555..2841250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQW70_RS15080 (EQW70_15080) minD 2831491..2832297 (-) 807 WP_004398624.1 septum site-determining protein MinD -
  EQW70_RS15085 (EQW70_15085) minC 2832299..2832979 (-) 681 WP_004398901.1 septum site-determining protein MinC -
  EQW70_RS15090 (EQW70_15090) mreD 2833032..2833550 (-) 519 WP_128740603.1 rod shape-determining protein MreD -
  EQW70_RS15095 (EQW70_15095) mreC 2833547..2834419 (-) 873 WP_009967915.1 rod shape-determining protein MreC -
  EQW70_RS15100 (EQW70_15100) mreB 2834450..2835463 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  EQW70_RS15105 (EQW70_15105) ysxA/radC 2835555..2836250 (-) 696 WP_021480240.1 DNA repair protein RadC Machinery gene
  EQW70_RS15110 (EQW70_15110) maf 2836287..2836856 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  EQW70_RS15115 (EQW70_15115) spoIIB 2837010..2838008 (-) 999 WP_128740604.1 stage II sporulation protein SpoIIB -
  EQW70_RS15120 (EQW70_15120) comC 2838142..2838888 (-) 747 WP_021480242.1 A24 family peptidase Machinery gene
  EQW70_RS15125 (EQW70_15125) folC 2839029..2840321 (-) 1293 WP_128740605.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26137.47 Da        Isoelectric Point: 7.9141

>NTDB_id=294268 EQW70_RS15105 WP_021480240.1 2835555..2836250(-) (ysxA/radC) [Bacillus subtilis strain SRCM103517]
MVIQDLPLKLKDFPMKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=294268 EQW70_RS15105 WP_021480240.1 2835555..2836250(-) (ysxA/radC) [Bacillus subtilis strain SRCM103517]
TTGGTCATACAAGATCTGCCATTAAAACTCAAAGATTTCCCAATGAAAGAAAAGCCAAGAGAACGGCTCCTGAAAGTCGG
AGCCGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACCGGCTGCTGCGCTCATTTGACGGGCTGCGTCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCAAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCTGCAGTTGAGCTTGGAAGCCGGATTCATAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTTGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATCTGTGTTCATAATCATCCTTCTGGAGATCC
GACGCCGAGCAGGGAAGATATTGAAGTGACAAGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

99.567

100

0.996
  radC Streptococcus pneumoniae TIGR4

48.095

90.909

0.437
  radC Streptococcus pneumoniae R6

47.619

90.909

0.433
  radC Streptococcus pneumoniae D39

47.619

90.909

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

46.667

90.909

0.424