Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DLK06_RS00995 Genome accession   NZ_CP029610
Coordinates   215810..216397 (+) Length   195 a.a.
NCBI ID   WP_005066890.1    Uniprot ID   -
Organism   Acinetobacter pittii strain ST220     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 210810..221397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DLK06_RS00970 (DLK06_00970) - 211431..211784 (+) 354 WP_005066877.1 DUF1304 domain-containing protein -
  DLK06_RS00975 (DLK06_00975) glpM 211837..212178 (+) 342 WP_000263326.1 GlpM family protein -
  DLK06_RS00980 (DLK06_00980) tenA 212228..212902 (-) 675 WP_032057178.1 thiaminase II -
  DLK06_RS00985 (DLK06_00985) - 213165..214247 (+) 1083 WP_005066886.1 DUF475 domain-containing protein -
  DLK06_RS00990 (DLK06_00990) yajR 214394..215758 (+) 1365 WP_005078603.1 MFS transporter -
  DLK06_RS00995 (DLK06_00995) ssb 215810..216397 (+) 588 WP_005066890.1 single-stranded DNA-binding protein Machinery gene
  DLK06_RS01000 (DLK06_01000) - 216438..216761 (-) 324 WP_032057180.1 AzlD domain-containing protein -
  DLK06_RS01005 (DLK06_01005) - 216758..217453 (-) 696 WP_126117463.1 AzlC family ABC transporter permease -
  DLK06_RS01010 (DLK06_01010) ydcN 217522..218070 (+) 549 WP_002117406.1 helix-turn-helix domain-containing protein -
  DLK06_RS01015 (DLK06_01015) - 218376..219818 (+) 1443 WP_032057182.1 amino acid permease -
  DLK06_RS01020 (DLK06_01020) - 219884..221383 (-) 1500 WP_017399625.1 PLP-dependent aminotransferase family protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21223.01 Da        Isoelectric Point: 6.4822

>NTDB_id=294168 DLK06_RS00995 WP_005066890.1 215810..216397(+) (ssb) [Acinetobacter pittii strain ST220]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEAWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGNGYQNNNNQGGGYGQNSGGYGNQG
GFGNGGSNPQAGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=294168 DLK06_RS00995 WP_005066890.1 215810..216397(+) (ssb) [Acinetobacter pittii strain ST220]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTGACCCAATTTTCAATCGCGACAAGTGAAGCTTGGACTGATAAAAATACTGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTCTTGCGTAAAGGTTCTAAGGTTTATATTGAAGGT
TCATTACGTACGCGTCAGTGGACAGACCAAAATGGCCAAGAGCGTTACACTACAGAAATCCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTCGCTGGCGGTAATGATTTTAATCAACCACGTTTTAACGCACCTCAAC
AAGGTGGTAATGGTTATCAAAATAATAACAACCAAGGTGGCGGCTATGGCCAAAACAGCGGTGGTTATGGTAACCAAGGT
GGTTTCGGTAATGGTGGAAGCAACCCTCAAGCGGGTGGTTTTGCGCCTAAAGCGCCACAACAACCAGCTTCTGCACCAGC
TGATTTAGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.475

100

0.544
  ssb Vibrio cholerae strain A1552

44.5

100

0.456
  ssb Neisseria meningitidis MC58

39.394

100

0.4
  ssb Neisseria gonorrhoeae MS11

37.879

100

0.385

Multiple sequence alignment