Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   DLD99_RS24645 Genome accession   NZ_CP029608
Coordinates   5397100..5398446 (+) Length   448 a.a.
NCBI ID   WP_114885613.1    Uniprot ID   A0A345RW60
Organism   Pseudomonas kribbensis strain 46-2     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5392100..5403446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DLD99_RS24620 (DLD99_24615) pgeF 5392314..5393036 (-) 723 WP_114885607.1 peptidoglycan editing factor PgeF -
  DLD99_RS24625 (DLD99_24620) rluD 5393033..5393995 (-) 963 WP_085712174.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  DLD99_RS24630 (DLD99_24625) - 5394148..5395164 (+) 1017 WP_114885609.1 outer membrane protein assembly factor BamD -
  DLD99_RS24635 (DLD99_24630) - 5395291..5395524 (+) 234 WP_085712176.1 PP0621 family protein -
  DLD99_RS24640 (DLD99_24635) pilS 5395514..5397103 (+) 1590 WP_114885611.1 ATP-binding protein Regulator
  DLD99_RS24645 (DLD99_24640) pilR 5397100..5398446 (+) 1347 WP_114885613.1 sigma-54 dependent transcriptional regulator Regulator
  DLD99_RS24650 (DLD99_24645) thiO 5398443..5399543 (-) 1101 WP_114885615.1 glycine oxidase ThiO -
  DLD99_RS24655 (DLD99_24650) - 5399601..5400002 (-) 402 WP_085712180.1 type IV pilin protein -
  DLD99_RS24660 (DLD99_24655) - 5400017..5403109 (-) 3093 WP_114885617.1 PilC/PilY family type IV pilus protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 50074.36 Da        Isoelectric Point: 6.5932

>NTDB_id=294077 DLD99_RS24645 WP_114885613.1 5397100..5398446(+) (pilR) [Pseudomonas kribbensis strain 46-2]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLDTFSARNLGEAQALLNRDTFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAINALKVGAFDFLTKPVDLTRLRELVATALRMPATGGVCTSIDRRLLGDSLPMRNLRKQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRASQPFVPVNCGAIPSELMESEFFGHRKGSFTGAVDDKPGLFQAAHGGTLFLDEVA
DLPLSMQVKLLRAIQEKAVRSVGGQQETVVDVRILCATHKDLDAEVAAERFRQDLYYRLNVIELRVPSLRERRDDIEALA
SHVLKRLAHGTGQPAARLHPQALEALKNYRFPGNVRELENVLERAHTLCENRTIEADDLRLSEGNCAAEGGIADLTQIDN
LEDYLENVERKLILQALEETRWNRTAAAQRLNLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=294077 DLD99_RS24645 WP_114885613.1 5397100..5398446(+) (pilR) [Pseudomonas kribbensis strain 46-2]
TTGAACACGAGCCCACGGCAAAAAATCCTCATCGTCGACGACGAACCGGATATCCGCGAACTCCTGGAAATCACCCTGGG
ACGGATGAAACTCGACACCTTCAGCGCACGCAACCTCGGCGAAGCCCAGGCGCTGCTGAACCGCGACACCTTCGACCTGT
GCCTGACCGACATGCGCCTGCCGGACGGCACCGGGCTGGAACTGGTGCAGCACATTCAGCAACGCTACCCACAATTGCCG
GTGGCGATGATCACCGCCTATGGCAGCCTGGAAACAGCGATCAACGCCCTGAAAGTCGGGGCTTTCGACTTCCTGACCAA
ACCGGTGGACCTCACCCGACTGCGCGAGCTGGTCGCCACCGCGTTGCGCATGCCGGCGACGGGCGGCGTCTGCACCTCTA
TTGACCGGCGCCTGCTCGGTGACTCATTGCCCATGCGCAACCTGCGCAAGCAGATCGATAAACTGGCCCGCAGTCAGGCG
CCGGTCTATATCAGCGGCGAGTCCGGTAGTGGCAAGGAGCTGGTCGCCCGGCTGATTCACGAACAAGGCCCGCGCGCCAG
CCAACCATTCGTGCCAGTGAATTGCGGGGCGATTCCTTCGGAACTGATGGAGAGCGAGTTCTTCGGTCACCGCAAAGGCA
GTTTCACGGGTGCGGTGGACGATAAGCCGGGCCTGTTCCAGGCCGCCCATGGCGGGACGCTGTTTCTCGATGAAGTGGCG
GACTTGCCGCTGTCGATGCAGGTCAAGCTGCTGCGGGCAATCCAGGAAAAAGCCGTGCGCAGCGTCGGCGGCCAGCAGGA
GACCGTGGTCGATGTGCGTATTCTCTGCGCCACTCACAAGGACCTGGACGCCGAAGTCGCCGCCGAGCGCTTTCGGCAGG
ATCTGTATTACCGGCTGAACGTGATCGAACTGCGGGTGCCTTCTCTGCGCGAACGTCGTGACGATATCGAGGCATTGGCC
AGCCATGTGCTCAAGCGTCTGGCCCATGGCACTGGCCAGCCGGCGGCGCGCCTGCATCCACAAGCGCTGGAGGCCTTGAA
GAATTATCGCTTTCCGGGAAATGTCCGGGAGTTGGAGAACGTCCTCGAGCGCGCGCACACCCTGTGCGAAAACCGCACGA
TCGAGGCCGACGACCTGCGCCTGAGCGAAGGCAATTGCGCAGCCGAGGGCGGCATTGCCGATCTCACACAGATCGACAAC
CTCGAAGACTATCTGGAAAACGTCGAGCGCAAACTGATCCTGCAGGCGCTGGAGGAAACCCGCTGGAACCGTACGGCTGC
GGCCCAGCGGTTGAATCTGTCATTCCGTTCGATGCGCTACAGGCTCAAGAAGCTCGGCCTGGATTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-118)

Bacterial regulatory protein, Fis family (HTH_8)

(405-445)

Sigma-54 interaction domain (Sigma54_activat)

(139-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A345RW60

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

79.233

98.884

0.783
  pilR Acinetobacter baumannii strain A118

48.802

100

0.5
  luxO Vibrio cholerae strain A1552

37.387

99.107

0.371

Multiple sequence alignment