Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C1M51_RS09805 Genome accession   NZ_CP029606
Coordinates   2028747..2029253 (+) Length   168 a.a.
NCBI ID   WP_129449411.1    Uniprot ID   A0A4P6GVK0
Organism   Methylibium sp. Pch-M     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2023747..2034253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1M51_RS09790 (C1M51_09725) - 2024756..2025157 (+) 402 WP_129449409.1 Ig-like domain-containing protein -
  C1M51_RS09795 (C1M51_09730) recQ 2025226..2027127 (-) 1902 WP_242499639.1 DNA helicase RecQ -
  C1M51_RS09800 (C1M51_09735) - 2027176..2028558 (-) 1383 WP_129449410.1 chloride channel protein -
  C1M51_RS09805 (C1M51_09740) ssb 2028747..2029253 (+) 507 WP_129449411.1 single-stranded DNA-binding protein Machinery gene
  C1M51_RS09810 (C1M51_09745) - 2029363..2031183 (+) 1821 WP_129449412.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  C1M51_RS09815 (C1M51_09750) - 2031527..2032564 (+) 1038 WP_129449413.1 sulfonate ABC transporter substrate-binding protein -
  C1M51_RS09820 (C1M51_09755) - 2032574..2033569 (+) 996 WP_129449414.1 aliphatic sulfonate ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18501.62 Da        Isoelectric Point: 5.3795

>NTDB_id=294051 C1M51_RS09805 WP_129449411.1 2028747..2029253(+) (ssb) [Methylibium sp. Pch-M]
MASINKVILIGNLGRDPEVRYTPSGSAVCNISLATTRNWKSKDSGDKVEETEWHRVVFYDRLAEIAGEYLKKGRPVYVEG
RLKTRKWQDKDGVEKYTTEIIAEQMQLLGGREGMGGGDDGGYSRADDGDAPQRAARPPQRPAASRQAPAPAPQKSATGFD
DMDDDIPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=294051 C1M51_RS09805 WP_129449411.1 2028747..2029253(+) (ssb) [Methylibium sp. Pch-M]
ATGGCCTCCATCAACAAAGTCATCCTGATCGGCAACCTGGGCCGCGATCCCGAGGTGCGCTACACGCCCAGCGGTTCGGC
CGTGTGCAACATCAGCCTCGCCACCACCCGCAACTGGAAGAGCAAGGACAGCGGCGACAAGGTCGAGGAGACCGAATGGC
ACCGCGTGGTGTTCTACGACCGCCTGGCCGAGATCGCCGGCGAGTACCTGAAGAAGGGCCGCCCGGTCTACGTCGAAGGC
CGCCTGAAGACCCGCAAGTGGCAGGACAAGGACGGCGTCGAGAAGTACACCACCGAGATCATTGCCGAGCAGATGCAGCT
GCTCGGCGGCCGCGAGGGCATGGGCGGCGGCGATGACGGCGGCTATTCCCGCGCCGACGACGGCGACGCCCCGCAGCGCG
CGGCCCGCCCGCCGCAGCGCCCGGCCGCCTCGCGCCAGGCCCCCGCACCGGCCCCGCAGAAGTCGGCCACGGGCTTCGAC
GACATGGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4P6GVK0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.556

100

0.542
  ssb Neisseria meningitidis MC58

49.724

100

0.536
  ssb Neisseria gonorrhoeae MS11

49.438

100

0.524
  ssb Glaesserella parasuis strain SC1401

43.75

100

0.5

Multiple sequence alignment