Detailed information NTG0293969

Bioinformatically predicted

Overview

• Name: ysxA/radC
• Type: Machinery gene
• Locus tag: EQJ69_RS14920
• Genome accession: NZ_CP035188
• Coordinates: 2843652..2844326 (-)
• Length: 224 a.a.
• NCBI ID: WP_128472374.1
• Uniprot ID: -
• Organism: Bacillus licheniformis strain SRCM103914
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2838652..2849326

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EQJ69_RS14885 (EQJ69_14885)	-	2838763..2839191 (+)	429	WP_003184032.1	SRPBCC domain-containing protein	-
EQJ69_RS14890 (EQJ69_14890)	-	2839191..2839511 (+)	321	WP_003184034.1	metalloregulator ArsR/SmtB family transcription factor	-
EQJ69_RS14895 (EQJ69_14895)	minD	2839556..2840362 (-)	807	WP_003184035.1	septum site-determining protein MinD	-
EQJ69_RS14900 (EQJ69_14900)	minC	2840365..2841045 (-)	681	WP_011198163.1	septum site-determining protein MinC	-
EQJ69_RS14905 (EQJ69_14905)	mreD	2841100..2841618 (-)	519	WP_003184039.1	rod shape-determining protein MreD	-
EQJ69_RS14910 (EQJ69_14910)	mreC	2841615..2842523 (-)	909	WP_003184040.1	rod shape-determining protein MreC	-
EQJ69_RS14915 (EQJ69_14915)	-	2842554..2843564 (-)	1011	WP_003184042.1	rod shape-determining protein	-
EQJ69_RS14920 (EQJ69_14920)	ysxA/radC	2843652..2844326 (-)	675	WP_128472374.1	DNA repair protein RadC	Machinery gene
EQJ69_RS14925 (EQJ69_14925)	-	2844381..2844953 (-)	573	WP_003184048.1	Maf family protein	-
EQJ69_RS14930 (EQJ69_14930)	-	2845107..2846138 (-)	1032	WP_003184050.1	SPOR domain-containing protein	-
EQJ69_RS14935 (EQJ69_14935)	comC	2846342..2847091 (-)	750	WP_003184052.1	A24 family peptidase	Machinery gene
EQJ69_RS14940 (EQJ69_14940)	-	2847234..2848532 (-)	1299	WP_309149026.1	folylpolyglutamate synthase/dihydrofolate synthase family protein	-

Sequence

Protein

• Length: 224 a.a.
• Molecular weight: 25253.18 Da
• Isoelectric Point: 8.7170

>NTDB_id=293969 EQJ69_RS14920 WP_128472374.1 2843652..2844326(-) (ysxA/radC) [Bacillus licheniformis strain SRCM103914]
MKLKDFPDEERPRERLLNTGAESLSNHELLAILLRTGTKKESVLQLSSRLLQTFDGLRLLKEASAEELSSISGIGRAKAV
QILAALELGRRIHSLACKDRYVIRFPEDAANFLMGDMRFLSQEHFVCVYLNTKKQVIHKRTVFIGSLNSSIVHPREVFKE
ALKRSAASFICVHNHPSGDPAPSREDIEVTQRLHESGQLLGIELLDHIIIGDQKFVSLKEKGYL

Nucleotide

• Length: 675 bp

>NTDB_id=293969 EQJ69_RS14920 WP_128472374.1 2843652..2844326(-) (ysxA/radC) [Bacillus licheniformis strain SRCM103914]
TTGAAATTAAAAGATTTTCCTGATGAAGAAAGGCCAAGGGAGCGCCTTCTCAACACAGGCGCCGAAAGTTTGTCAAACCA
TGAACTGCTTGCGATACTGCTCAGAACCGGTACGAAAAAAGAATCGGTTCTTCAGCTTTCAAGCCGGCTGCTTCAAACGT
TTGACGGCCTCCGTTTGTTAAAAGAAGCATCCGCCGAGGAGCTTTCAAGCATTTCCGGGATCGGCCGCGCAAAAGCCGTG
CAGATTTTGGCGGCCCTTGAGCTTGGCCGGCGCATTCACAGTCTGGCTTGCAAAGACCGTTATGTGATTCGTTTTCCCGA
AGATGCGGCCAATTTTTTAATGGGGGATATGCGCTTTCTCTCTCAGGAGCACTTCGTATGTGTGTATCTGAACACGAAAA
AACAGGTGATCCACAAGCGCACGGTTTTTATAGGGAGCCTGAACTCTTCAATCGTCCATCCGAGGGAAGTGTTTAAAGAA
GCTTTAAAGCGCTCCGCAGCTTCATTCATCTGCGTCCACAATCATCCGTCCGGAGATCCGGCTCCAAGCCGCGAAGACAT
AGAAGTTACACAGCGCCTTCACGAGTCCGGACAGCTGCTCGGAATCGAATTGCTCGATCATATCATCATCGGTGATCAAA
AATTTGTGAGCTTAAAAGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

• RadC-like JAB domain (RadC) (104-222)

• UPF0758 N-terminal (UPF0758_N) (4-80)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	80.357	100	0.804
radC	Streptococcus pneumoniae TIGR4	46.19	93.75	0.433
radC	Streptococcus pneumoniae R6	45.714	93.75	0.429
radC	Streptococcus pneumoniae D39	45.714	93.75	0.429
radC	Streptococcus gordonii str. Challis substr. CH1	44.286	93.75	0.415