Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | DK843_RS09760 | Genome accession | NZ_CP029554 |
| Coordinates | 2002384..2003304 (-) | Length | 306 a.a. |
| NCBI ID | WP_114060249.1 | Uniprot ID | A0A344UH11 |
| Organism | Chromobacterium phragmitis strain IIBBL 274-1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1997384..2008304
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DK843_RS09725 (DK843_09725) | - | 1997536..1997952 (+) | 417 | WP_114060245.1 | MaoC family dehydratase | - |
| DK843_RS09730 (DK843_09730) | queG | 1997956..1998993 (-) | 1038 | WP_328589948.1 | tRNA epoxyqueuosine(34) reductase QueG | - |
| DK843_RS09735 (DK843_09735) | tsaE | 1999031..1999525 (+) | 495 | WP_114060247.1 | tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE | - |
| DK843_RS09740 (DK843_09740) | - | 1999483..2000724 (+) | 1242 | WP_114060248.1 | N-acetylmuramoyl-L-alanine amidase | - |
| DK843_RS09745 (DK843_09745) | yacG | 2000793..2000984 (-) | 192 | WP_114063600.1 | DNA gyrase inhibitor YacG | - |
| DK843_RS09750 (DK843_09750) | zapD | 2000990..2001748 (-) | 759 | WP_168191805.1 | cell division protein ZapD | - |
| DK843_RS09755 (DK843_09755) | coaE | 2001785..2002399 (-) | 615 | WP_114073138.1 | dephospho-CoA kinase | - |
| DK843_RS09760 (DK843_09760) | pilD | 2002384..2003304 (-) | 921 | WP_114060249.1 | prepilin peptidase | Machinery gene |
| DK843_RS09765 (DK843_09765) | pilC | 2003304..2004527 (-) | 1224 | WP_114060250.1 | type II secretion system F family protein | Machinery gene |
| DK843_RS09770 (DK843_09770) | pilF | 2004567..2006273 (-) | 1707 | WP_114073139.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| DK843_RS09775 (DK843_09775) | - | 2006442..2007566 (-) | 1125 | WP_114073140.1 | porin | - |
| DK843_RS09780 (DK843_09780) | - | 2007963..2008283 (-) | 321 | WP_114073141.1 | ComEA family DNA-binding protein | - |
Sequence
Protein
Download Length: 306 a.a. Molecular weight: 33204.31 Da Isoelectric Point: 7.5465
>NTDB_id=293463 DK843_RS09760 WP_114060249.1 2002384..2003304(-) (pilD) [Chromobacterium phragmitis strain IIBBL 274-1]
MLDDIGWLLATHPAWLVGVAVVFGLLVGSFLNVVICRLPRMEEREFLADSVEYLAEGGGSSSLRLAALQARQEMGEEAEY
NLWRPASHCPACRTPVAPWRNVPLLSFLLLRGKCGSCGAAISWRYPLVESLCGLLFGFLAWKLGWGWPLAGALLLTAFLL
ALAFIDLDTKLLPDRLTLPLLWGGLLFNLQTGQVPLASAVLGAVYGYMTLWLVSNAYKLVAGRHGMGGGDFKLLAALGAW
LGWTMLPLIVLLSSFVGAVCGIVMLSLSRIGRGQEIPFGPYLTAAGWIALVWGEQIVNGYLSWLSR
MLDDIGWLLATHPAWLVGVAVVFGLLVGSFLNVVICRLPRMEEREFLADSVEYLAEGGGSSSLRLAALQARQEMGEEAEY
NLWRPASHCPACRTPVAPWRNVPLLSFLLLRGKCGSCGAAISWRYPLVESLCGLLFGFLAWKLGWGWPLAGALLLTAFLL
ALAFIDLDTKLLPDRLTLPLLWGGLLFNLQTGQVPLASAVLGAVYGYMTLWLVSNAYKLVAGRHGMGGGDFKLLAALGAW
LGWTMLPLIVLLSSFVGAVCGIVMLSLSRIGRGQEIPFGPYLTAAGWIALVWGEQIVNGYLSWLSR
Nucleotide
Download Length: 921 bp
>NTDB_id=293463 DK843_RS09760 WP_114060249.1 2002384..2003304(-) (pilD) [Chromobacterium phragmitis strain IIBBL 274-1]
ATGCTGGACGATATCGGATGGCTGCTGGCCACGCACCCGGCTTGGCTGGTCGGCGTGGCGGTGGTGTTTGGATTGCTGGT
AGGCAGTTTTCTCAATGTGGTGATTTGCCGCTTGCCCAGAATGGAGGAGCGGGAGTTTTTGGCCGATAGCGTGGAATATT
TGGCCGAGGGGGGCGGATCCTCCTCGCTGCGGCTGGCTGCGCTGCAGGCCCGGCAGGAAATGGGAGAGGAGGCCGAATAC
AATTTGTGGCGCCCCGCCTCGCATTGTCCGGCTTGCCGGACGCCGGTGGCTCCTTGGCGCAATGTGCCGCTGCTGAGCTT
CCTGCTGCTGCGCGGGAAGTGCGGGTCTTGCGGCGCAGCCATCTCCTGGCGCTATCCATTGGTGGAGTCGCTGTGCGGAC
TGCTGTTCGGTTTCCTGGCTTGGAAGCTGGGCTGGGGCTGGCCACTGGCCGGCGCGCTGTTGTTGACGGCTTTTCTGCTG
GCGTTGGCCTTCATCGATCTCGACACAAAACTGTTGCCGGACCGACTGACGTTGCCCTTGCTATGGGGCGGGCTGCTGTT
CAATTTGCAGACGGGGCAGGTGCCGCTGGCGTCCGCCGTGCTTGGCGCGGTTTATGGCTATATGACGCTATGGCTGGTGT
CGAATGCGTACAAGCTGGTGGCTGGGCGACATGGAATGGGCGGCGGCGACTTCAAGTTGTTGGCGGCGCTGGGGGCCTGG
CTTGGGTGGACAATGCTGCCATTGATCGTATTGTTGTCTTCGTTTGTCGGCGCGGTTTGCGGCATCGTCATGCTATCGCT
CTCGCGCATCGGCCGCGGGCAAGAAATACCGTTTGGCCCCTATCTGACCGCCGCGGGCTGGATCGCTCTGGTATGGGGCG
AGCAAATCGTGAATGGATATTTGTCATGGCTATCCCGGTAG
ATGCTGGACGATATCGGATGGCTGCTGGCCACGCACCCGGCTTGGCTGGTCGGCGTGGCGGTGGTGTTTGGATTGCTGGT
AGGCAGTTTTCTCAATGTGGTGATTTGCCGCTTGCCCAGAATGGAGGAGCGGGAGTTTTTGGCCGATAGCGTGGAATATT
TGGCCGAGGGGGGCGGATCCTCCTCGCTGCGGCTGGCTGCGCTGCAGGCCCGGCAGGAAATGGGAGAGGAGGCCGAATAC
AATTTGTGGCGCCCCGCCTCGCATTGTCCGGCTTGCCGGACGCCGGTGGCTCCTTGGCGCAATGTGCCGCTGCTGAGCTT
CCTGCTGCTGCGCGGGAAGTGCGGGTCTTGCGGCGCAGCCATCTCCTGGCGCTATCCATTGGTGGAGTCGCTGTGCGGAC
TGCTGTTCGGTTTCCTGGCTTGGAAGCTGGGCTGGGGCTGGCCACTGGCCGGCGCGCTGTTGTTGACGGCTTTTCTGCTG
GCGTTGGCCTTCATCGATCTCGACACAAAACTGTTGCCGGACCGACTGACGTTGCCCTTGCTATGGGGCGGGCTGCTGTT
CAATTTGCAGACGGGGCAGGTGCCGCTGGCGTCCGCCGTGCTTGGCGCGGTTTATGGCTATATGACGCTATGGCTGGTGT
CGAATGCGTACAAGCTGGTGGCTGGGCGACATGGAATGGGCGGCGGCGACTTCAAGTTGTTGGCGGCGCTGGGGGCCTGG
CTTGGGTGGACAATGCTGCCATTGATCGTATTGTTGTCTTCGTTTGTCGGCGCGGTTTGCGGCATCGTCATGCTATCGCT
CTCGCGCATCGGCCGCGGGCAAGAAATACCGTTTGGCCCCTATCTGACCGCCGCGGGCTGGATCGCTCTGGTATGGGGCG
AGCAAATCGTGAATGGATATTTGTCATGGCTATCCCGGTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Neisseria gonorrhoeae MS11 |
50.69 |
94.771 |
0.48 |
| pilD | Vibrio cholerae strain A1552 |
47.586 |
94.771 |
0.451 |
| pilD | Vibrio campbellii strain DS40M4 |
45.548 |
95.425 |
0.435 |
| pilD | Acinetobacter nosocomialis M2 |
43.854 |
98.366 |
0.431 |
| pilD | Acinetobacter baumannii D1279779 |
43.189 |
98.366 |
0.425 |