Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DK419_RS11435 Genome accession   NZ_CP029553
Coordinates   2544982..2545548 (-) Length   188 a.a.
NCBI ID   WP_109959184.1    Uniprot ID   -
Organism   Methylobacterium terrae strain 17Sr1-28     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2539982..2550548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK419_RS11420 (DK419_11420) - 2540762..2541514 (-) 753 WP_109959181.1 DUF2076 domain-containing protein -
  DK419_RS11425 (DK419_11425) - 2541817..2543988 (+) 2172 WP_109959182.1 malate synthase G -
  DK419_RS11430 (DK419_11430) - 2544081..2544425 (-) 345 WP_109959183.1 XRE family transcriptional regulator -
  DK419_RS11435 (DK419_11435) ssb 2544982..2545548 (-) 567 WP_109959184.1 single-stranded DNA-binding protein Machinery gene
  DK419_RS11440 (DK419_11440) - 2545767..2547056 (-) 1290 WP_109959185.1 O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase family protein -
  DK419_RS11445 (DK419_11445) - 2547082..2547516 (-) 435 WP_109962254.1 response regulator -
  DK419_RS11450 (DK419_11450) - 2547673..2548836 (-) 1164 WP_109959186.1 PAS domain-containing sensor histidine kinase -
  DK419_RS11455 (DK419_11455) - 2549079..2550356 (-) 1278 WP_109959187.1 O-acetylhomoserine aminocarboxypropyltransferase -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20070.05 Da        Isoelectric Point: 7.0238

>NTDB_id=293446 DK419_RS11435 WP_109959184.1 2544982..2545548(-) (ssb) [Methylobacterium terrae strain 17Sr1-28]
MAGSVNKVILVGNLGRDPETRRLASGDPVVNLRLATSESWKDKASGERKEKTEWHSVVIYNENLARVAEQYLRKGSKVYV
EGQLQTRKWQDQSGVEKYTTEIVLQRFRGELTILDGRGGGAEGGMSEMGADDMGGGQISRGGDYGGGGGGRSSGGGRSSS
GGERRPAPASSGGGNQKRYDDLDDDIPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=293446 DK419_RS11435 WP_109959184.1 2544982..2545548(-) (ssb) [Methylobacterium terrae strain 17Sr1-28]
ATGGCGGGCAGCGTGAACAAGGTGATCCTGGTGGGCAATCTCGGGCGCGACCCCGAGACCCGCCGCCTGGCCTCCGGCGA
TCCGGTGGTGAACCTGCGGCTGGCCACGTCCGAGTCCTGGAAGGACAAGGCGTCGGGCGAGCGCAAGGAGAAGACCGAGT
GGCACTCGGTCGTGATCTACAACGAGAACCTGGCCCGCGTCGCCGAGCAGTACCTGCGCAAGGGCTCGAAGGTCTACGTC
GAGGGCCAGCTCCAGACCCGCAAGTGGCAGGACCAGTCCGGCGTCGAGAAGTACACGACCGAGATCGTGCTGCAGCGCTT
CCGCGGCGAGCTGACGATCCTCGACGGCCGCGGCGGCGGTGCCGAGGGCGGCATGTCCGAGATGGGCGCCGACGACATGG
GCGGCGGCCAGATCAGCCGCGGCGGCGATTACGGCGGCGGTGGCGGTGGTCGCAGCAGCGGCGGTGGACGCTCGTCCTCC
GGCGGCGAGCGGCGCCCGGCTCCAGCCTCGAGCGGCGGCGGCAACCAGAAGCGCTACGACGACCTGGACGACGATATCCC
GTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.691

100

0.495
  ssb Vibrio cholerae strain A1552

48.37

97.872

0.473
  ssb Neisseria meningitidis MC58

37.838

98.404

0.372
  ssb Neisseria gonorrhoeae MS11

37.297

98.404

0.367

Multiple sequence alignment