Detailed information NTG0293277

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: DKM44_RS06820
• Genome accession: NZ_CP029494
• Coordinates: 1366480..1367700 (-)
• Length: 406 a.a.
• NCBI ID: WP_109826392.1
• Uniprot ID: -
• Organism: Deinococcus irradiatisoli strain 17bor-2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	1365477..1365884	1366480..1367700	flank	596

Gene organization within MGE regions

Location: 1365477..1367700

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DKM44_RS06815 (DKM44_06815)	-	1365484..1366255 (-)	772	Protein_1364	IS5 family transposase	-
DKM44_RS06820 (DKM44_06820)	pilC	1366480..1367700 (-)	1221	WP_109826392.1	type II secretion system F family protein	Machinery gene

Sequence

Protein

• Length: 406 a.a.
• Molecular weight: 44219.19 Da
• Isoelectric Point: 9.9823

>NTDB_id=293277 DKM44_RS06820 WP_109826392.1 1366480..1367700(-) (pilC) [Deinococcus irradiatisoli strain 17bor-2]
MPVFEYRVRDRSGKVLKSQVEADTVAQVRDSLRAKGLMIVDIKAPKTGLQGDINIPFLNDRPPGLKPVAIFSRQLATLIN
AGVPLVQGLTIMQRQLEHKGLQNVVRKVRVDVEAGTPFSESIAKHPKVFNRLYVNLVRAGETSGTLDSVLERISDFQEKD
LALRGKLKSAMTYPVIVLIFALLITYFLLTTVVPQFGGILAQLGGDLPVITRILIAVSDFLKTKTIIIVAIGAVIFFAMR
QYYRTAKGRRVIDDFKLKVPVFGTLLRRSAIASFARTFGLLISSGVNIIESLEITKGTANNAIVEDTIENAKNVVMVGEQ
MSGSLAASPVFPPMVVSMVAIGEETGALDTMLAKVADFYDREVEEAVEGLTAAIEPIMIVFLGGIVGLIVAGMFLPMFSI
INKLSQ

Nucleotide

• Length: 1221 bp

>NTDB_id=293277 DKM44_RS06820 WP_109826392.1 1366480..1367700(-) (pilC) [Deinococcus irradiatisoli strain 17bor-2]
ATGCCGGTCTTCGAATACCGCGTGCGTGACCGCAGCGGCAAGGTGCTCAAATCACAGGTGGAAGCGGACACCGTTGCCCA
GGTCCGCGATTCGCTGCGCGCCAAGGGCTTGATGATCGTCGACATCAAAGCGCCCAAAACAGGGTTACAGGGCGACATCA
ACATCCCTTTCCTCAACGACCGGCCGCCGGGCCTCAAGCCGGTGGCTATTTTCTCGCGCCAGCTCGCCACGCTGATCAAT
GCGGGCGTGCCGCTGGTGCAGGGTCTGACCATCATGCAGCGTCAGCTCGAACACAAAGGTCTGCAAAATGTGGTGCGTAA
GGTCCGGGTGGACGTGGAAGCCGGCACGCCTTTTTCCGAGTCCATTGCCAAACATCCCAAGGTCTTCAACCGCCTCTATG
TCAACCTGGTTCGTGCCGGCGAGACCAGCGGCACGCTCGACAGCGTGCTGGAACGCATCAGTGATTTTCAGGAAAAGGAC
CTGGCCCTGCGCGGCAAGCTCAAGAGTGCCATGACTTACCCAGTCATCGTCTTGATCTTTGCGTTGTTGATCACCTACTT
CCTGCTGACCACGGTGGTGCCGCAGTTCGGCGGCATATTGGCACAACTAGGCGGTGACTTGCCGGTCATCACCCGCATCC
TGATTGCGGTGTCGGATTTCCTGAAAACCAAGACCATCATTATCGTAGCGATAGGGGCCGTGATCTTCTTCGCAATGCGT
CAGTACTACCGTACCGCCAAGGGAAGACGGGTTATCGACGACTTCAAACTGAAAGTTCCCGTGTTCGGTACCCTGCTGCG
CCGCAGCGCCATCGCCAGCTTCGCGCGAACCTTCGGACTGTTGATCAGCAGCGGCGTGAACATTATCGAGAGTCTGGAGA
TCACCAAAGGAACTGCCAACAACGCCATCGTCGAAGACACCATTGAGAATGCTAAGAACGTGGTGATGGTGGGTGAGCAG
ATGAGCGGCAGCCTGGCCGCCAGCCCGGTGTTTCCGCCGATGGTGGTCAGCATGGTGGCAATCGGTGAGGAGACCGGCGC
TCTGGACACCATGCTCGCCAAAGTGGCCGACTTTTACGACCGCGAGGTCGAGGAAGCGGTAGAGGGCCTGACTGCCGCCA
TCGAACCAATCATGATCGTGTTTCTCGGCGGCATCGTCGGCCTGATCGTGGCTGGGATGTTCCTGCCAATGTTTAGCATC
ATCAACAAGCTCAGCCAGTAG

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (71-194)

• Type II secretion system (T2SS), protein F (T2SSF) (274-396)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Thermus thermophilus HB27	57.882	100	0.579
pilC	Acinetobacter baumannii D1279779	36.386	99.507	0.362
pilC	Acinetobacter baylyi ADP1	36.476	99.261	0.362
pilC	Pseudomonas stutzeri DSM 10701	36.476	99.261	0.362