Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | DJ564_RS29210 | Genome accession | NZ_CP029482 |
| Coordinates | 6180562..6181089 (-) | Length | 175 a.a. |
| NCBI ID | WP_016969466.1 | Uniprot ID | A0A0J6H7U2 |
| Organism | Pseudomonas sp. 31-12 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 6175562..6186089
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DJ564_RS29190 (DJ564_29190) | - | 6175838..6176266 (+) | 429 | WP_109635246.1 | DUF350 domain-containing protein | - |
| DJ564_RS29195 (DJ564_29195) | - | 6176285..6177004 (+) | 720 | WP_109635248.1 | DUF1190 domain-containing protein | - |
| DJ564_RS29200 (DJ564_29200) | - | 6177017..6178174 (+) | 1158 | WP_109635249.1 | glutathionylspermidine synthase family protein | - |
| DJ564_RS29205 (DJ564_29205) | - | 6178284..6180488 (+) | 2205 | WP_109635251.1 | OsmC domain/YcaO domain-containing protein | - |
| DJ564_RS29210 (DJ564_29210) | ssb | 6180562..6181089 (-) | 528 | WP_016969466.1 | single-stranded DNA-binding protein | Machinery gene |
| DJ564_RS29215 (DJ564_29215) | - | 6181099..6182496 (-) | 1398 | WP_109635253.1 | MFS transporter | - |
| DJ564_RS29220 (DJ564_29220) | uvrA | 6182688..6185522 (+) | 2835 | WP_109635255.1 | excinuclease ABC subunit UvrA | - |
| DJ564_RS29225 (DJ564_29225) | bfr | 6185588..6186052 (-) | 465 | WP_007943775.1 | bacterioferritin | - |
Sequence
Protein
Download Length: 175 a.a. Molecular weight: 19370.52 Da Isoelectric Point: 5.9314
>NTDB_id=293099 DJ564_RS29210 WP_016969466.1 6180562..6181089(-) (ssb) [Pseudomonas sp. 31-12]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQGGGNNYQQSAPAPRQQAPRPQQSAPQQSRQAPAPQQAAP
QPAPDFDSFDDDIPF
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQGGGNNYQQSAPAPRQQAPRPQQSAPQQSRQAPAPQQAAP
QPAPDFDSFDDDIPF
Nucleotide
Download Length: 528 bp
>NTDB_id=293099 DJ564_RS29210 WP_016969466.1 6180562..6181089(-) (ssb) [Pseudomonas sp. 31-12]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAAACCGGTCAGAAGGTCGAGAAGACCGAAT
GGCACCGTGTTTCGATGTTCGGCAAGGTGGCCGAGATCGCCGGTGAATACCTGCGTAAAGGTTCGCAGGTCTACATCGAA
GGCAAACTGCAGACCCGCGAGTGGGAAAAAGACGGTATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTCGGCGGTCGTCCACAACAGGGCGACCAACAAGGCGGGGGCAATAACTATCAGCAGTCTGCCCCGGCTC
CACGCCAGCAGGCGCCGCGTCCGCAGCAGTCGGCACCGCAACAGTCGCGTCAGGCTCCGGCTCCACAGCAGGCTGCTCCG
CAGCCAGCACCGGATTTCGACAGCTTTGATGACGATATCCCGTTCTGA
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAAACCGGTCAGAAGGTCGAGAAGACCGAAT
GGCACCGTGTTTCGATGTTCGGCAAGGTGGCCGAGATCGCCGGTGAATACCTGCGTAAAGGTTCGCAGGTCTACATCGAA
GGCAAACTGCAGACCCGCGAGTGGGAAAAAGACGGTATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTCGGCGGTCGTCCACAACAGGGCGACCAACAAGGCGGGGGCAATAACTATCAGCAGTCTGCCCCGGCTC
CACGCCAGCAGGCGCCGCGTCCGCAGCAGTCGGCACCGCAACAGTCGCGTCAGGCTCCGGCTCCACAGCAGGCTGCTCCG
CAGCCAGCACCGGATTTCGACAGCTTTGATGACGATATCCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
58.889 |
100 |
0.606 |
| ssb | Glaesserella parasuis strain SC1401 |
48.634 |
100 |
0.509 |
| ssb | Neisseria meningitidis MC58 |
47.222 |
100 |
0.486 |
| ssb | Neisseria gonorrhoeae MS11 |
47.222 |
100 |
0.486 |