Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | C4E04_RS16755 | Genome accession | NZ_CP029481 |
| Coordinates | 3560932..3561438 (+) | Length | 168 a.a. |
| NCBI ID | WP_109597739.1 | Uniprot ID | A0A2Z3I602 |
| Organism | Microvirga sp. 17 mud 1-3 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 3555932..3566438
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C4E04_RS16730 (C4E04_16730) | - | 3556768..3558594 (-) | 1827 | WP_245416134.1 | AAA family ATPase | - |
| C4E04_RS16735 (C4E04_16735) | - | 3558591..3558887 (-) | 297 | WP_109599204.1 | hypothetical protein | - |
| C4E04_RS16740 (C4E04_16740) | - | 3559174..3559770 (+) | 597 | WP_162559436.1 | hypothetical protein | - |
| C4E04_RS16745 (C4E04_16745) | - | 3559842..3560183 (+) | 342 | WP_109599208.1 | hypothetical protein | - |
| C4E04_RS16750 (C4E04_16750) | - | 3560218..3560493 (+) | 276 | WP_109599210.1 | hypothetical protein | - |
| C4E04_RS16755 (C4E04_16755) | ssb | 3560932..3561438 (+) | 507 | WP_109597739.1 | single-stranded DNA-binding protein | Machinery gene |
| C4E04_RS16760 (C4E04_16760) | - | 3562567..3563454 (-) | 888 | WP_109599212.1 | hypothetical protein | - |
| C4E04_RS16765 (C4E04_16765) | - | 3563640..3565952 (+) | 2313 | WP_109599214.1 | acyl-CoA dehydrogenase | - |
Sequence
Protein
Download Length: 168 a.a. Molecular weight: 18647.67 Da Isoelectric Point: 6.0169
>NTDB_id=293071 C4E04_RS16755 WP_109597739.1 3560932..3561438(+) (ssb) [Microvirga sp. 17 mud 1-3]
MAGSVNKVILVGNLGRDPEVRRLNSGEPVVNLRIATSETWKDKASGERKEKTEWHSVVIFNENLARVAEQYLKKGSKVYI
EGQLQTRKWQDQSGAEKYTTEVVLQRFRGELTILDSRGGGSSEYGEEEQGQVSRGGEFGRSSPMERRPAAAPSGGGSRFN
DLDDDIPF
MAGSVNKVILVGNLGRDPEVRRLNSGEPVVNLRIATSETWKDKASGERKEKTEWHSVVIFNENLARVAEQYLKKGSKVYI
EGQLQTRKWQDQSGAEKYTTEVVLQRFRGELTILDSRGGGSSEYGEEEQGQVSRGGEFGRSSPMERRPAAAPSGGGSRFN
DLDDDIPF
Nucleotide
Download Length: 507 bp
>NTDB_id=293071 C4E04_RS16755 WP_109597739.1 3560932..3561438(+) (ssb) [Microvirga sp. 17 mud 1-3]
ATGGCGGGCAGTGTGAACAAGGTGATATTGGTGGGGAACCTGGGGCGTGACCCTGAGGTGCGCCGGCTGAATTCGGGCGA
GCCGGTGGTAAACCTGCGGATCGCCACCTCGGAGACCTGGAAGGACAAGGCCTCGGGCGAGCGCAAGGAAAAGACCGAGT
GGCACTCGGTGGTAATCTTCAACGAGAACCTGGCCCGGGTGGCCGAGCAGTACCTGAAGAAGGGCTCGAAAGTCTATATC
GAGGGGCAGCTGCAGACCCGCAAATGGCAGGACCAGAGCGGGGCCGAGAAATACACCACCGAGGTGGTGCTGCAGCGCTT
CCGCGGCGAGCTGACGATCCTGGACAGCCGCGGCGGCGGCTCGTCGGAATATGGCGAGGAGGAGCAAGGCCAGGTCAGCC
GCGGCGGCGAGTTCGGCCGCTCCTCGCCGATGGAGCGCCGTCCGGCGGCCGCACCGAGCGGCGGCGGCTCGCGCTTCAAC
GACCTCGACGACGACATTCCGTTCTAG
ATGGCGGGCAGTGTGAACAAGGTGATATTGGTGGGGAACCTGGGGCGTGACCCTGAGGTGCGCCGGCTGAATTCGGGCGA
GCCGGTGGTAAACCTGCGGATCGCCACCTCGGAGACCTGGAAGGACAAGGCCTCGGGCGAGCGCAAGGAAAAGACCGAGT
GGCACTCGGTGGTAATCTTCAACGAGAACCTGGCCCGGGTGGCCGAGCAGTACCTGAAGAAGGGCTCGAAAGTCTATATC
GAGGGGCAGCTGCAGACCCGCAAATGGCAGGACCAGAGCGGGGCCGAGAAATACACCACCGAGGTGGTGCTGCAGCGCTT
CCGCGGCGAGCTGACGATCCTGGACAGCCGCGGCGGCGGCTCGTCGGAATATGGCGAGGAGGAGCAAGGCCAGGTCAGCC
GCGGCGGCGAGTTCGGCCGCTCCTCGCCGATGGAGCGCCGTCCGGCGGCCGCACCGAGCGGCGGCGGCTCGCGCTTCAAC
GACCTCGACGACGACATTCCGTTCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
51.124 |
100 |
0.542 |
| ssb | Glaesserella parasuis strain SC1401 |
44.92 |
100 |
0.5 |
| ssb | Neisseria meningitidis MC58 |
42.458 |
100 |
0.452 |
| ssb | Neisseria gonorrhoeae MS11 |
41.341 |
100 |
0.44 |