Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C4E04_RS12090 Genome accession   NZ_CP029481
Coordinates   2521384..2521890 (-) Length   168 a.a.
NCBI ID   WP_109597739.1    Uniprot ID   A0A2Z3I602
Organism   Microvirga sp. 17 mud 1-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2516384..2526890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4E04_RS12075 (C4E04_12075) - 2516887..2518143 (+) 1257 WP_109597736.1 calcium-binding protein -
  C4E04_RS12080 (C4E04_12080) - 2518493..2519749 (+) 1257 WP_162559375.1 calcium-binding protein -
  C4E04_RS12085 (C4E04_12085) - 2519892..2521004 (-) 1113 WP_109597738.1 M20 family metallopeptidase -
  C4E04_RS12090 (C4E04_12090) ssb 2521384..2521890 (-) 507 WP_109597739.1 single-stranded DNA-binding protein Machinery gene
  C4E04_RS12095 (C4E04_12095) - 2522014..2522364 (-) 351 WP_109597740.1 hypothetical protein -
  C4E04_RS12100 (C4E04_12100) - 2522496..2524178 (-) 1683 WP_109597741.1 M10 family metallopeptidase C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18647.67 Da        Isoelectric Point: 6.0169

>NTDB_id=293069 C4E04_RS12090 WP_109597739.1 2521384..2521890(-) (ssb) [Microvirga sp. 17 mud 1-3]
MAGSVNKVILVGNLGRDPEVRRLNSGEPVVNLRIATSETWKDKASGERKEKTEWHSVVIFNENLARVAEQYLKKGSKVYI
EGQLQTRKWQDQSGAEKYTTEVVLQRFRGELTILDSRGGGSSEYGEEEQGQVSRGGEFGRSSPMERRPAAAPSGGGSRFN
DLDDDIPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=293069 C4E04_RS12090 WP_109597739.1 2521384..2521890(-) (ssb) [Microvirga sp. 17 mud 1-3]
ATGGCGGGCAGTGTGAACAAGGTGATATTGGTGGGGAACCTGGGGCGTGACCCTGAGGTGCGCCGGCTGAATTCGGGCGA
GCCGGTGGTGAACCTGCGGATCGCCACCTCGGAGACCTGGAAGGACAAGGCCTCGGGCGAGCGCAAGGAAAAGACCGAGT
GGCACTCGGTGGTGATCTTCAACGAGAACCTGGCCCGGGTGGCCGAGCAGTACCTGAAGAAGGGCTCGAAAGTCTACATC
GAGGGGCAGCTGCAGACCCGCAAATGGCAGGACCAGAGCGGGGCCGAGAAATACACCACCGAGGTGGTGCTGCAGCGCTT
CCGCGGCGAGCTGACGATCCTGGACAGCCGCGGCGGCGGCTCGTCGGAATATGGCGAGGAGGAGCAAGGCCAGGTCAGCC
GCGGCGGCGAGTTCGGCCGCTCCTCGCCGATGGAGCGCCGTCCGGCGGCCGCACCGAGCGGCGGCGGCTCGCGCTTCAAC
GACCTCGACGACGACATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z3I602

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.124

100

0.542
  ssb Glaesserella parasuis strain SC1401

44.92

100

0.5
  ssb Neisseria meningitidis MC58

42.458

100

0.452
  ssb Neisseria gonorrhoeae MS11

41.341

100

0.44

Multiple sequence alignment