Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   FORC086_RS27095 Genome accession   NZ_CP029468
Coordinates   5326339..5326851 (-) Length   170 a.a.
NCBI ID   WP_138101446.1    Uniprot ID   -
Organism   Bacillus cereus strain FORC_086     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5321339..5331851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC086_RS27075 (FORC086_27810) rplI 5322554..5323000 (-) 447 WP_000864228.1 50S ribosomal protein L9 -
  FORC086_RS27080 (FORC086_27815) - 5322997..5324970 (-) 1974 WP_001113785.1 DHH family phosphoesterase -
  FORC086_RS27085 (FORC086_27820) - 5325049..5325980 (-) 932 Protein_5221 YybS family protein -
  FORC086_RS27090 (FORC086_27825) rpsR 5326060..5326293 (-) 234 WP_000918873.1 30S ribosomal protein S18 -
  FORC086_RS27095 (FORC086_27830) ssbA 5326339..5326851 (-) 513 WP_138101446.1 single-stranded DNA-binding protein Machinery gene
  FORC086_RS27100 (FORC086_27835) rpsF 5326878..5327168 (-) 291 WP_001233778.1 30S ribosomal protein S6 -
  FORC086_RS27105 (FORC086_27840) ychF 5327360..5328460 (-) 1101 WP_000524657.1 redox-regulated ATPase YchF -
  FORC086_RS27110 (FORC086_27845) - 5328576..5328773 (-) 198 WP_000435485.1 DUF951 domain-containing protein -
  FORC086_RS27115 (FORC086_27850) - 5328794..5329675 (-) 882 WP_000364814.1 mechanosensitive ion channel family protein -
  FORC086_RS27120 (FORC086_27855) yyaC 5329935..5330531 (+) 597 WP_001020714.1 spore protease YyaC -
  FORC086_RS27125 (FORC086_27860) spo0J 5330552..5331403 (-) 852 WP_001051832.1 stage 0 sporulation protein Spo0J -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18524.32 Da        Isoelectric Point: 4.9327

>NTDB_id=292898 FORC086_RS27095 WP_138101446.1 5326339..5326851(-) (ssbA) [Bacillus cereus strain FORC_086]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYEGQDGKRVYVTEVLAESVQFLEPRNSGGEQRGSFNQQPSGAGFGNQGSNPFGQSSNSGNQGNSGFTKNDDPFSNVGQP
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=292898 FORC086_RS27095 WP_138101446.1 5326339..5326851(-) (ssbA) [Bacillus cereus strain FORC_086]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTCGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCCAATCAGCAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTAGCAAATTATTTGAAAAAAGGTAGCTTAGCAGGCGTAGATGGACGTCTTCAAACTCGT
AATTACGAGGGACAAGATGGTAAACGTGTATACGTAACAGAAGTTCTTGCGGAAAGCGTGCAATTTTTAGAGCCGCGTAA
TAGCGGTGGGGAGCAACGTGGTTCATTTAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAGGCTCTAACCCATTTG
GTCAATCTAGTAATTCAGGTAACCAAGGTAATTCTGGATTTACGAAGAATGACGATCCATTTTCAAATGTAGGTCAACCG
ATCGACATTTCCGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

72

100

0.741
  ssb Latilactobacillus sakei subsp. sakei 23K

58.621

100

0.6
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

62.353

0.406
  ssb Glaesserella parasuis strain SC1401

37.989

100

0.4

Multiple sequence alignment