Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   BPUM_RS11020 Genome accession   NC_009848
Coordinates   2224220..2224513 (-) Length   97 a.a.
NCBI ID   WP_012010565.1    Uniprot ID   -
Organism   Bacillus pumilus SAFR-032     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2219220..2229513
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BPUM_RS10970 (BPUM_2193) sinR 2219382..2219717 (+) 336 WP_012010555.1 transcriptional regulator SinR Regulator
  BPUM_RS10975 (BPUM_2194) tasA 2219785..2220585 (-) 801 WP_012010556.1 biofilm matrix protein TasA -
  BPUM_RS10980 (BPUM_2195) sipW 2220643..2221215 (-) 573 WP_012010557.1 signal peptidase I SipW -
  BPUM_RS10985 (BPUM_2196) tapA 2221267..2221794 (-) 528 WP_012010558.1 amyloid fiber anchoring/assembly protein TapA -
  BPUM_RS10990 (BPUM_2197) - 2222094..2222372 (+) 279 WP_061827416.1 DUF3889 domain-containing protein -
  BPUM_RS10995 (BPUM_2198) - 2222407..2222601 (-) 195 WP_012010560.1 YqzE family protein -
  BPUM_RS11000 (BPUM_2199) - 2222661..2223044 (-) 384 WP_012010561.1 competence type IV pilus minor pilin ComGG -
  BPUM_RS11005 (BPUM_2200) comGF 2223041..2223541 (-) 501 WP_041815716.1 competence type IV pilus minor pilin ComGF -
  BPUM_RS11010 (BPUM_2201) comGE 2223480..2223797 (-) 318 WP_012010563.1 competence type IV pilus minor pilin ComGE -
  BPUM_RS11015 (BPUM_2202) comGD 2223781..2224227 (-) 447 WP_041815719.1 competence type IV pilus minor pilin ComGD -
  BPUM_RS11020 (BPUM_2203) comGC 2224220..2224513 (-) 294 WP_012010565.1 competence type IV pilus major pilin ComGC Machinery gene
  BPUM_RS11025 (BPUM_2204) comGB 2224530..2225609 (-) 1080 WP_225970031.1 competence type IV pilus assembly protein ComGB -
  BPUM_RS11030 (BPUM_2205) comGA 2225551..2226621 (-) 1071 WP_012010567.1 competence type IV pilus ATPase ComGA Machinery gene
  BPUM_RS11035 (BPUM_2206) - 2226799..2227671 (-) 873 WP_012010568.1 STAS domain-containing protein -
  BPUM_RS11045 (BPUM_2207) - 2227894..2228274 (-) 381 WP_003217382.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  BPUM_RS11050 (BPUM_2208) - 2228488..2228730 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -
  BPUM_RS11055 (BPUM_2209) - 2228777..2229415 (-) 639 WP_041815722.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10767.70 Da        Isoelectric Point: 7.3839

>NTDB_id=29286 BPUM_RS11020 WP_012010565.1 2224220..2224513(-) (comGC) [Bacillus pumilus SAFR-032]
MNDKGFTLLEMLIVMLVISILLLITIPNITRHHQTIQAKGCEGLKSMVSTQVMAYELEHDGRTPSLAELEKEGYVKKGLT
CPNGKAIVIQNGHVKHE

Nucleotide


Download         Length: 294 bp        

>NTDB_id=29286 BPUM_RS11020 WP_012010565.1 2224220..2224513(-) (comGC) [Bacillus pumilus SAFR-032]
ATGAATGATAAAGGATTTACTCTGTTAGAAATGTTAATTGTCATGCTTGTGATTTCAATTCTTTTACTTATTACCATTCC
AAATATCACTCGTCATCATCAAACGATTCAAGCAAAGGGCTGTGAAGGGCTTAAATCAATGGTAAGCACACAGGTGATGG
CATATGAATTAGAGCACGATGGCAGAACACCATCTTTAGCTGAATTAGAAAAAGAAGGCTATGTCAAAAAGGGATTAACG
TGTCCTAATGGAAAAGCGATTGTCATTCAAAACGGCCATGTGAAGCATGAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

68.041

100

0.68
  comGC Staphylococcus aureus MW2

41.304

94.845

0.392
  comGC Staphylococcus aureus N315

41.304

94.845

0.392

Multiple sequence alignment