Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | BPUM_RS10970 | Genome accession | NC_009848 |
| Coordinates | 2219382..2219717 (+) | Length | 111 a.a. |
| NCBI ID | WP_012010555.1 | Uniprot ID | - |
| Organism | Bacillus pumilus SAFR-032 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2214382..2224717
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BPUM_RS10955 (BPUM_2189) | gcvT | 2214860..2215957 (-) | 1098 | WP_012010552.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| BPUM_RS10960 (BPUM_2190) | - | 2216519..2218189 (+) | 1671 | WP_012010553.1 | DEAD/DEAH box helicase | - |
| BPUM_RS10965 (BPUM_2191) | - | 2218204..2219001 (+) | 798 | WP_012010554.1 | YqhG family protein | - |
| BPUM_RS18810 (BPUM_2192) | - | 2219184..2219348 (+) | 165 | WP_003217357.1 | anti-repressor SinI family protein | - |
| BPUM_RS10970 (BPUM_2193) | sinR | 2219382..2219717 (+) | 336 | WP_012010555.1 | transcriptional regulator SinR | Regulator |
| BPUM_RS10975 (BPUM_2194) | tasA | 2219785..2220585 (-) | 801 | WP_012010556.1 | biofilm matrix protein TasA | - |
| BPUM_RS10980 (BPUM_2195) | sipW | 2220643..2221215 (-) | 573 | WP_012010557.1 | signal peptidase I SipW | - |
| BPUM_RS10985 (BPUM_2196) | tapA | 2221267..2221794 (-) | 528 | WP_012010558.1 | amyloid fiber anchoring/assembly protein TapA | - |
| BPUM_RS10990 (BPUM_2197) | - | 2222094..2222372 (+) | 279 | WP_061827416.1 | DUF3889 domain-containing protein | - |
| BPUM_RS10995 (BPUM_2198) | - | 2222407..2222601 (-) | 195 | WP_012010560.1 | YqzE family protein | - |
| BPUM_RS11000 (BPUM_2199) | - | 2222661..2223044 (-) | 384 | WP_012010561.1 | competence type IV pilus minor pilin ComGG | - |
| BPUM_RS11005 (BPUM_2200) | comGF | 2223041..2223541 (-) | 501 | WP_041815716.1 | competence type IV pilus minor pilin ComGF | - |
| BPUM_RS11010 (BPUM_2201) | comGE | 2223480..2223797 (-) | 318 | WP_012010563.1 | competence type IV pilus minor pilin ComGE | - |
| BPUM_RS11015 (BPUM_2202) | comGD | 2223781..2224227 (-) | 447 | WP_041815719.1 | competence type IV pilus minor pilin ComGD | - |
| BPUM_RS11020 (BPUM_2203) | comGC | 2224220..2224513 (-) | 294 | WP_012010565.1 | competence type IV pilus major pilin ComGC | Machinery gene |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 13001.59 Da Isoelectric Point: 5.2831
>NTDB_id=29285 BPUM_RS10970 WP_012010555.1 2219382..2219717(+) (sinR) [Bacillus pumilus SAFR-032]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLHEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLHEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE
Nucleotide
Download Length: 336 bp
>NTDB_id=29285 BPUM_RS10970 WP_012010555.1 2219382..2219717(+) (sinR) [Bacillus pumilus SAFR-032]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTACACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTACACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
94.595 |
100 |
0.946 |