Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   DKG76_RS12975 Genome accession   NZ_CP029465
Coordinates   2639690..2640760 (-) Length   356 a.a.
NCBI ID   WP_003236962.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain KCTC 13429     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2634690..2645760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKG76_RS12930 (DKG76_12930) tapA 2635171..2635935 (-) 765 WP_003236944.1 amyloid fiber anchoring/assembly protein TapA -
  DKG76_RS12935 (DKG76_12935) - 2636208..2636531 (+) 324 WP_003236947.1 YqzG/YhdC family protein -
  DKG76_RS12940 (DKG76_12940) - 2636573..2636752 (-) 180 WP_003236949.1 YqzE family protein -
  DKG76_RS12945 (DKG76_12945) comGG 2636823..2637197 (-) 375 WP_003236951.1 competence type IV pilus minor pilin ComGG Machinery gene
  DKG76_RS12950 (DKG76_12950) comGF 2637198..2637581 (-) 384 WP_032731882.1 competence type IV pilus minor pilin ComGF Machinery gene
  DKG76_RS12955 (DKG76_12955) comGE 2637607..2637951 (-) 345 WP_003236954.1 competence type IV pilus minor pilin ComGE Machinery gene
  DKG76_RS12960 (DKG76_12960) comGD 2637935..2638366 (-) 432 WP_003236956.1 competence type IV pilus minor pilin ComGD Machinery gene
  DKG76_RS12965 (DKG76_12965) comGC 2638356..2638652 (-) 297 WP_003236957.1 comG operon protein ComGC Machinery gene
  DKG76_RS12970 (DKG76_12970) comGB 2638666..2639703 (-) 1038 WP_003236959.1 competence type IV pilus assembly protein ComGB Machinery gene
  DKG76_RS12975 (DKG76_12975) comGA 2639690..2640760 (-) 1071 WP_003236962.1 competence protein ComGA Machinery gene
  DKG76_RS12980 (DKG76_12980) - 2640723..2640953 (-) 231 WP_032731884.1 hypothetical protein -
  DKG76_RS12985 (DKG76_12985) - 2640976..2641386 (-) 411 WP_003236965.1 CBS domain-containing protein -
  DKG76_RS12990 (DKG76_12990) corA 2641449..2642393 (-) 945 WP_003236968.1 magnesium transporter CorA -
  DKG76_RS12995 (DKG76_12995) - 2642536..2643864 (+) 1329 WP_003236970.1 hemolysin family protein -
  DKG76_RS13000 (DKG76_13000) - 2643924..2644763 (-) 840 WP_003236972.1 STAS domain-containing protein -
  DKG76_RS13010 (DKG76_13010) mgsR 2644987..2645364 (-) 378 WP_003236975.1 transcriptional regulator MgsR -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40484.68 Da        Isoelectric Point: 9.1889

>NTDB_id=292743 DKG76_RS12975 WP_003236962.1 2639690..2640760(-) (comGA) [Bacillus inaquosorum strain KCTC 13429]
MDSIEKISRTLIEEAYITKASDIHIVPRERDAIIHFRVDHALLKKRNMKKEECVRLISHFKFLSAMDIGERRKPQNGSLT
LKLEEGHVHLRMSTLPTINEESLVIRVMPQYNIPSIDKLSLFPKTGATLLSFLKHSHGMLIFTGPTGSGKTTTLYSLVQY
AKKHFNRNIVTLEDPVETRDEDVLQVQVNEKAGVTYSTGLKAILRHDPDMIILGEIRDAETAKIAVRAAMTGHLVLTSLH
TRDAKGAIYRLLEFGINMNEIQQTVIAIAAQRLVDLACPFCENGCSSVYCRQSRSTRRASVYELLYGKNLQQCIQEAKGN
HANYQYQTLRQIIRKGIALGYLTTNNYDRWVYHETD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=292743 DKG76_RS12975 WP_003236962.1 2639690..2640760(-) (comGA) [Bacillus inaquosorum strain KCTC 13429]
TTGGATTCAATAGAAAAGATAAGCAGAACCTTGATTGAAGAGGCATATATAACAAAGGCTTCTGATATTCACATTGTGCC
GAGGGAGCGTGATGCCATCATTCATTTTCGGGTTGATCATGCATTGCTTAAAAAAAGGAACATGAAAAAAGAAGAGTGTG
TAAGACTGATTTCACATTTTAAATTTCTCTCAGCGATGGACATAGGGGAAAGACGAAAGCCGCAAAATGGTTCGCTTACG
TTAAAGCTTGAAGAGGGACATGTTCATTTAAGAATGTCAACGCTCCCCACAATTAATGAAGAAAGCCTCGTGATCAGAGT
GATGCCTCAATATAATATCCCTTCGATTGATAAACTGTCATTATTTCCGAAGACAGGAGCCACCTTGCTCTCATTTTTAA
AACATTCCCACGGCATGCTCATTTTTACCGGGCCGACTGGTTCAGGGAAGACCACTACACTATACTCTCTTGTTCAATAT
GCAAAAAAACACTTTAATCGAAATATTGTCACACTGGAGGACCCTGTTGAAACAAGGGACGAGGATGTTCTTCAGGTGCA
GGTGAATGAAAAAGCGGGTGTGACATATTCCACAGGGCTGAAGGCTATTTTGCGCCATGACCCGGATATGATTATTTTAG
GTGAGATCAGAGACGCGGAAACAGCCAAAATTGCGGTGCGGGCAGCGATGACGGGGCATTTGGTGCTGACGAGCCTTCAC
ACGAGAGATGCGAAGGGCGCGATTTACAGGCTGCTTGAATTCGGCATCAATATGAATGAAATCCAACAGACCGTCATTGC
AATAGCGGCTCAGCGCTTGGTTGATTTGGCTTGCCCGTTTTGTGAAAACGGATGTTCATCGGTGTATTGCCGCCAGTCAC
GAAGCACCAGGAGAGCAAGCGTTTATGAGCTTCTTTACGGGAAAAATCTTCAGCAATGTATCCAGGAGGCAAAAGGAAAT
CATGCAAATTACCAGTATCAAACGCTTCGTCAAATTATCAGAAAAGGAATTGCGCTTGGCTACTTGACGACAAACAATTA
TGACCGGTGGGTTTATCATGAAACAGATTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

96.629

100

0.966
  pilB Glaesserella parasuis strain SC1401

43.878

82.584

0.362

Multiple sequence alignment