Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   DKG76_RS12915 Genome accession   NZ_CP029465
Coordinates   2633337..2633672 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus inaquosorum strain KCTC 13429     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2628337..2638672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKG76_RS12895 (DKG76_12895) gcvT 2628925..2630013 (-) 1089 WP_003236933.1 glycine cleavage system aminomethyltransferase GcvT -
  DKG76_RS12900 (DKG76_12900) - 2630457..2632130 (+) 1674 WP_003236934.1 SNF2-related protein -
  DKG76_RS12905 (DKG76_12905) - 2632151..2632945 (+) 795 WP_003236936.1 YqhG family protein -
  DKG76_RS12910 (DKG76_12910) sinI 2633130..2633303 (+) 174 WP_003226347.1 anti-repressor SinI family protein Regulator
  DKG76_RS12915 (DKG76_12915) sinR 2633337..2633672 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  DKG76_RS12920 (DKG76_12920) tasA 2633766..2634551 (-) 786 WP_003236939.1 biofilm matrix protein TasA -
  DKG76_RS12925 (DKG76_12925) - 2634615..2635187 (-) 573 WP_003236942.1 signal peptidase I -
  DKG76_RS12930 (DKG76_12930) tapA 2635171..2635935 (-) 765 WP_003236944.1 amyloid fiber anchoring/assembly protein TapA -
  DKG76_RS12935 (DKG76_12935) - 2636208..2636531 (+) 324 WP_003236947.1 YqzG/YhdC family protein -
  DKG76_RS12940 (DKG76_12940) - 2636573..2636752 (-) 180 WP_003236949.1 YqzE family protein -
  DKG76_RS12945 (DKG76_12945) comGG 2636823..2637197 (-) 375 WP_003236951.1 competence type IV pilus minor pilin ComGG Machinery gene
  DKG76_RS12950 (DKG76_12950) comGF 2637198..2637581 (-) 384 WP_032731882.1 competence type IV pilus minor pilin ComGF Machinery gene
  DKG76_RS12955 (DKG76_12955) comGE 2637607..2637951 (-) 345 WP_003236954.1 competence type IV pilus minor pilin ComGE Machinery gene
  DKG76_RS12960 (DKG76_12960) comGD 2637935..2638366 (-) 432 WP_003236956.1 competence type IV pilus minor pilin ComGD Machinery gene
  DKG76_RS12965 (DKG76_12965) comGC 2638356..2638652 (-) 297 WP_003236957.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=292736 DKG76_RS12915 WP_003226345.1 2633337..2633672(+) (sinR) [Bacillus inaquosorum strain KCTC 13429]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=292736 DKG76_RS12915 WP_003226345.1 2633337..2633672(+) (sinR) [Bacillus inaquosorum strain KCTC 13429]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCAATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment