Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   DJ572_RS15820 Genome accession   NZ_CP029461
Coordinates   3028463..3029107 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain QB61     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3023463..3034107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DJ572_RS15785 (DJ572_15695) mrpB 3024653..3025084 (+) 432 WP_038429537.1 Na(+)/H(+) antiporter subunit B -
  DJ572_RS15790 (DJ572_15700) mrpC 3025084..3025425 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  DJ572_RS15795 (DJ572_15705) mrpD 3025418..3026899 (+) 1482 WP_038429539.1 Na+/H+ antiporter subunit D -
  DJ572_RS15800 (DJ572_15710) mrpE 3026905..3027381 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  DJ572_RS15805 (DJ572_15715) mrpF 3027381..3027665 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  DJ572_RS15810 (DJ572_15720) mnhG 3027649..3028023 (+) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  DJ572_RS15815 (DJ572_15725) yuxO 3028064..3028444 (-) 381 WP_017695528.1 hotdog fold thioesterase -
  DJ572_RS15820 (DJ572_15730) comA 3028463..3029107 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  DJ572_RS15825 (DJ572_15735) comP 3029188..3031497 (-) 2310 WP_119899725.1 two-component system sensor histidine kinase ComP Regulator
  DJ572_RS15830 (DJ572_15740) comX 3031516..3031683 (-) 168 WP_101501417.1 competence pheromone ComX Regulator
  DJ572_RS15835 (DJ572_15745) comQ 3031701..3032570 (-) 870 WP_119899727.1 ComX modifying isoprenyl transferase ComQ Regulator
  DJ572_RS15840 (DJ572_15750) degQ 3032755..3032895 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  DJ572_RS15845 - 3033117..3033242 (+) 126 WP_003228793.1 hypothetical protein -
  DJ572_RS15850 (DJ572_15755) - 3033358..3033726 (+) 369 WP_119899729.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=292593 DJ572_RS15820 WP_003220716.1 3028463..3029107(-) (comA) [Bacillus subtilis strain QB61]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=292593 DJ572_RS15820 WP_003220716.1 3028463..3029107(-) (comA) [Bacillus subtilis strain QB61]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment