Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DFH04_RS03880 Genome accession   NZ_CP029458
Coordinates   828637..829092 (-) Length   151 a.a.
NCBI ID   WP_003374838.1    Uniprot ID   -
Organism   Clostridium novyi strain 150557     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 823637..834092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DFH04_RS03855 (DFH04_03855) rplI 824442..824885 (-) 444 WP_003374911.1 50S ribosomal protein L9 -
  DFH04_RS03860 (DFH04_03860) - 824888..826873 (-) 1986 WP_120361771.1 DHH family phosphoesterase -
  DFH04_RS03865 (DFH04_03865) - 826875..827876 (-) 1002 WP_243128928.1 DUF2232 domain-containing protein -
  DFH04_RS03870 (DFH04_03870) - 827895..828206 (-) 312 WP_003374832.1 MazG-like family protein -
  DFH04_RS03875 (DFH04_03875) rpsR 828360..828596 (-) 237 WP_003374900.1 30S ribosomal protein S18 -
  DFH04_RS03880 (DFH04_03880) ssbA 828637..829092 (-) 456 WP_003374838.1 single-stranded DNA-binding protein Machinery gene
  DFH04_RS03885 (DFH04_03885) rpsF 829104..829391 (-) 288 WP_003374944.1 30S ribosomal protein S6 -
  DFH04_RS03890 (DFH04_03890) - 829522..829731 (-) 210 WP_003374910.1 DUF951 domain-containing protein -
  DFH04_RS03895 (DFH04_03895) - 829896..830534 (+) 639 WP_003374976.1 LysE family translocator -
  DFH04_RS03900 (DFH04_03900) yyaC 830602..831216 (+) 615 WP_120361773.1 spore protease YyaC -
  DFH04_RS03905 (DFH04_03905) - 831262..831759 (-) 498 WP_003374833.1 DUF4446 family protein -
  DFH04_RS03910 (DFH04_03910) - 831805..832653 (-) 849 WP_174226663.1 ParB/RepB/Spo0J family partition protein -
  DFH04_RS03915 (DFH04_03915) - 832646..833431 (-) 786 WP_120361775.1 ParA family protein -

Sequence

Protein


Download         Length: 151 a.a.        Molecular weight: 16617.34 Da        Isoelectric Point: 4.5507

>NTDB_id=292519 DFH04_RS03880 WP_003374838.1 828637..829092(-) (ssbA) [Clostridium novyi strain 150557]
MNRVVLVGRLTKDPELRFTPGTGKAVATFTLAVNRRFKSPGQPEADFLPIVVWGKQAENTANYVGKGSQVGVSGAIHTRS
YEAKDGTRRYVTEIVADEVQFLDSRNAVSRTEPKYTGMNEFDSSNNNSGDINPVEDYDDDITPIDDGDIPF

Nucleotide


Download         Length: 456 bp        

>NTDB_id=292519 DFH04_RS03880 WP_003374838.1 828637..829092(-) (ssbA) [Clostridium novyi strain 150557]
ATGAATAGAGTTGTTTTAGTTGGAAGATTGACAAAAGATCCAGAACTAAGATTTACACCCGGAACTGGTAAAGCTGTTGC
AACGTTCACTTTAGCTGTTAACAGAAGGTTTAAAAGCCCAGGACAACCGGAAGCTGATTTTTTACCTATAGTAGTATGGG
GAAAACAAGCTGAGAATACGGCCAATTATGTTGGTAAGGGTAGTCAGGTTGGAGTAAGTGGTGCTATACATACTAGAAGT
TATGAAGCTAAAGATGGAACTAGAAGATATGTTACAGAAATTGTAGCTGATGAGGTGCAATTCTTAGATTCAAGAAATGC
TGTCTCAAGAACAGAGCCAAAATATACAGGAATGAACGAATTTGATTCATCAAATAACAATTCTGGAGACATAAATCCAG
TTGAAGATTATGATGATGATATCACTCCAATAGATGATGGAGATATACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

45.087

100

0.517
  ssb Latilactobacillus sakei subsp. sakei 23K

49.219

84.768

0.417
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.194

68.212

0.411
  ssbB Streptococcus sobrinus strain NIDR 6715-7

54.286

69.536

0.377

Multiple sequence alignment