Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DF184_RS08565 Genome accession   NZ_CP029398
Coordinates   1726098..1726592 (-) Length   164 a.a.
NCBI ID   WP_014638587.1    Uniprot ID   G7SHQ7
Organism   Streptococcus suis strain HN105     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1724356..1725849 1726098..1726592 flank 249


Gene organization within MGE regions


Location: 1724356..1726592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DF184_RS08555 (DF184_08555) - 1724356..1725860 (+) 1505 Protein_1618 IS1182 family transposase -
  DF184_RS08560 (DF184_08560) rpsR 1725826..1726065 (-) 240 WP_002939250.1 30S ribosomal protein S18 -
  DF184_RS08565 (DF184_08565) ssbA 1726098..1726592 (-) 495 WP_014638587.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18026.77 Da        Isoelectric Point: 4.7294

>NTDB_id=292290 DF184_RS08565 WP_014638587.1 1726098..1726592(-) (ssbA) [Streptococcus suis strain HN105]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINVVIWRQQAENLANWAKKGALIGVTGRIQTR
SYDNQQGQRVYVTEVVAESFQLLESRTAREGQGGGYSAGNSFAGGNDSNSPYQAPAQSTPNFAREESPFGASNPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=292290 DF184_RS08565 WP_014638587.1 1726098..1726592(-) (ssbA) [Streptococcus suis strain HN105]
ATGATTAATAATGTAGTATTGGTTGGTCGTATGACCCGTGATGCAGAACTTCGTTATACTCCGTCTAATCAAGCTGTTGC
GACTTTTACTTTGGCGGTTAACCGCAATTTTAAAAATCAAAACGGTGAGCGTGAAGCGGACTTTATCAACGTAGTCATTT
GGCGTCAACAAGCTGAGAATTTGGCGAATTGGGCTAAGAAAGGTGCTCTGATTGGTGTTACAGGTCGTATCCAGACACGT
AGCTATGACAATCAGCAAGGGCAACGTGTCTACGTTACTGAGGTAGTTGCAGAAAGTTTCCAACTCTTGGAAAGCCGTAC
TGCCCGTGAAGGTCAAGGTGGAGGCTATTCAGCTGGCAACTCGTTTGCTGGAGGAAATGATTCCAACTCACCTTATCAAG
CGCCTGCACAATCTACACCAAACTTCGCTCGAGAAGAAAGTCCATTTGGAGCAAGTAATCCGATGGATATATCAGACGAT
GACCTACCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G7SHQ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.604
  ssb Latilactobacillus sakei subsp. sakei 23K

58.235

100

0.604
  ssb Glaesserella parasuis strain SC1401

32.105

100

0.372
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

66.463

0.366

Multiple sequence alignment