Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   DF184_RS07860 Genome accession   NZ_CP029398
Coordinates   1585522..1586166 (+) Length   214 a.a.
NCBI ID   WP_109371773.1    Uniprot ID   -
Organism   Streptococcus suis strain HN105     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1580522..1591166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DF184_RS07835 (DF184_07835) - 1581182..1582519 (-) 1338 WP_105136382.1 hemolysin family protein -
  DF184_RS07840 (DF184_07840) - 1582652..1583431 (+) 780 WP_029171496.1 ABC transporter ATP-binding protein -
  DF184_RS07845 (DF184_07845) - 1583447..1584001 (-) 555 WP_109371769.1 class I SAM-dependent methyltransferase -
  DF184_RS07850 (DF184_07850) - 1584011..1584529 (-) 519 WP_109371771.1 TetR/AcrR family transcriptional regulator -
  DF184_RS07855 (DF184_07855) - 1584651..1585469 (+) 819 WP_024415241.1 cation diffusion facilitator family transporter -
  DF184_RS07860 (DF184_07860) cclA/cilC 1585522..1586166 (+) 645 WP_109371773.1 A24 family peptidase Machinery gene
  DF184_RS07865 (DF184_07865) - 1586274..1587734 (+) 1461 WP_014638479.1 nicotinate phosphoribosyltransferase -
  DF184_RS07870 (DF184_07870) nadE 1587747..1588571 (+) 825 WP_109371775.1 ammonia-dependent NAD(+) synthetase -
  DF184_RS07875 (DF184_07875) trpB 1588613..1589788 (-) 1176 WP_024393839.1 tryptophan synthase subunit beta -
  DF184_RS07880 (DF184_07880) - 1590608..1591135 (-) 528 WP_024388286.1 VanZ family protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24203.28 Da        Isoelectric Point: 8.4760

>NTDB_id=292286 DF184_RS07860 WP_109371773.1 1585522..1586166(+) (cclA/cilC) [Streptococcus suis strain HN105]
MKTIILFFLGASIGSFLGLVIDRFPEQSIISPSSHCNACKRRLKAWDLIPILSQLSTKSKCRYCKAKIPYWYLGLEFLAG
LVVLLCHFQVLNLTETILSLAGLVLTIYDIKHQEYPFAVWLVFTFIALVLSQLNWLFCGFLLLAYLTEKWQINIGSGDFL
YLASLALICGFTELLWIIQISSLLGLLVFAIFKPKSIPYVPLLFLSSIPIILCI

Nucleotide


Download         Length: 645 bp        

>NTDB_id=292286 DF184_RS07860 WP_109371773.1 1585522..1586166(+) (cclA/cilC) [Streptococcus suis strain HN105]
ATGAAGACAATTATCCTATTTTTCCTTGGAGCTTCAATCGGCTCCTTCTTGGGATTGGTCATCGACCGTTTCCCTGAACA
GTCCATTATCTCCCCCTCTAGTCACTGCAATGCCTGCAAGCGACGGCTCAAGGCCTGGGACCTAATACCCATCCTGTCCC
AGCTTTCGACAAAATCTAAATGCCGTTACTGCAAGGCGAAGATACCTTATTGGTATCTGGGATTGGAATTCTTAGCTGGT
CTAGTCGTCCTGCTCTGCCATTTTCAAGTCCTAAACCTAACCGAAACCATTCTCAGCTTAGCAGGGCTAGTTTTAACCAT
TTATGACATCAAGCATCAGGAATATCCCTTTGCTGTCTGGCTCGTTTTTACTTTTATAGCTCTGGTACTCTCCCAGCTCA
ACTGGCTTTTCTGTGGCTTTTTACTCTTGGCCTATCTGACTGAAAAATGGCAAATCAATATTGGTTCTGGTGACTTTCTC
TATCTGGCAAGTTTGGCCTTAATATGTGGATTTACAGAACTCCTCTGGATTATCCAGATTAGTTCCCTCCTAGGGCTTCT
TGTCTTCGCCATTTTCAAACCCAAGTCTATTCCCTACGTACCACTCCTTTTTCTTTCAAGTATTCCTATCATTCTGTGCA
TCTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

50

99.065

0.495
  cclA/cilC Streptococcus pneumoniae Rx1

49.515

96.262

0.477
  cclA/cilC Streptococcus pneumoniae D39

49.515

96.262

0.477
  cclA/cilC Streptococcus pneumoniae R6

49.515

96.262

0.477
  cclA/cilC Streptococcus pneumoniae TIGR4

47.642

99.065

0.472
  cclA/cilC Streptococcus mitis NCTC 12261

45.755

99.065

0.453

Multiple sequence alignment