Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   DJ533_RS17870 Genome accession   NZ_CP029397
Coordinates   3210744..3211877 (+) Length   377 a.a.
NCBI ID   WP_065994477.1    Uniprot ID   A0A2S2FH57
Organism   Acinetobacter defluvii strain WCHA30     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 3205744..3216877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DJ533_RS17850 (DJ533_17890) - 3206203..3208302 (-) 2100 WP_065994473.1 TonB-dependent copper receptor -
  DJ533_RS17855 (DJ533_17895) - 3208373..3208813 (-) 441 WP_065994474.1 DUF2946 family protein -
  DJ533_RS17860 (DJ533_17900) def 3208906..3209436 (-) 531 WP_065994475.1 peptide deformylase -
  DJ533_RS17865 (DJ533_17905) tsaP 3209559..3210710 (+) 1152 WP_065994476.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  DJ533_RS17870 (DJ533_17910) dprA 3210744..3211877 (+) 1134 WP_065994477.1 DNA-processing protein DprA Machinery gene
  DJ533_RS17875 (DJ533_17915) - 3211919..3212488 (+) 570 WP_065994478.1 L-threonylcarbamoyladenylate synthase -
  DJ533_RS17885 (DJ533_17925) - 3213263..3214177 (-) 915 WP_065994479.1 DMT family transporter -
  DJ533_RS17890 (DJ533_17930) - 3214580..3215332 (+) 753 WP_089024794.1 AraC family transcriptional regulator -
  DJ533_RS17895 (DJ533_17935) - 3215555..3216091 (+) 537 WP_065994481.1 hypothetical protein -

Sequence


Protein


Download         Length: 377 a.a.        Molecular weight: 42115.24 Da        Isoelectric Point: 6.4499

>NTDB_id=292246 DJ533_RS17870 WP_065994477.1 3210744..3211877(+) (dprA) [Acinetobacter defluvii strain WCHA30]
MLNFISDVQLNTIKLWYLVQHSNLAFKSLEGYFGSVAKAVLPENLARWSEVAIHKNHVQRAQDLLTDVGQVAFQQCLEKL
KQHSDFILLENDNHYPQQLLPYSDHPPILFGQGAWQNLSQPQVAIVGSRKPSPHGKQVAYDFAYYLSEKGFFITSGLAEG
IDAAAHMGALKNLRTIAVVGTGLDQIYPTQNRQLHAQILENAGTIISLYLPNTPPLKSNFPRRNRIVSGLSLGVLVAEAA
LESGSLITAQAAAEQGKIIFAIPGHIYSEYHQGCHQLIREGAILVDHPEQIIEDLALPTQWLCKNTEKTQQIEKLPELPE
HLFQLYQHLDWVGQEIDILHQKTGLEIAALTGYLMELELLGLCIQQSGLYLRCRASH

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=292246 DJ533_RS17870 WP_065994477.1 3210744..3211877(+) (dprA) [Acinetobacter defluvii strain WCHA30]
ATGTTGAACTTTATATCTGATGTGCAATTAAACACCATCAAATTATGGTATTTAGTTCAACATTCAAATCTCGCATTTAA
AAGCTTAGAAGGCTACTTTGGCTCAGTTGCCAAAGCTGTTTTACCTGAAAATTTAGCACGTTGGTCAGAGGTCGCCATCC
ATAAAAACCATGTTCAACGTGCTCAGGATCTGCTAACTGATGTTGGACAAGTTGCCTTTCAACAGTGTCTTGAAAAATTA
AAACAACATAGTGATTTTATTCTTTTAGAAAATGACAATCACTATCCTCAACAACTGCTTCCTTACTCAGATCATCCCCC
AATTTTATTTGGACAAGGGGCTTGGCAAAATTTAAGCCAACCACAAGTAGCTATTGTTGGCAGCCGTAAACCCAGTCCAC
ATGGCAAGCAAGTCGCTTATGATTTTGCTTATTATTTGAGTGAAAAAGGCTTTTTTATCACCAGCGGTTTGGCAGAAGGG
ATTGATGCCGCAGCACATATGGGTGCGCTCAAAAATTTACGTACAATAGCTGTGGTCGGTACAGGCTTAGACCAAATTTA
TCCTACACAAAATCGTCAATTACATGCGCAAATTTTAGAAAATGCAGGGACAATTATTTCCCTCTATTTACCCAATACAC
CCCCGTTAAAGTCTAATTTCCCAAGGCGCAATCGGATTGTAAGTGGCTTGAGTTTGGGGGTTTTGGTGGCTGAAGCAGCT
TTAGAAAGTGGTTCTTTAATCACTGCGCAGGCGGCTGCTGAACAAGGTAAAATCATCTTTGCAATCCCAGGGCATATTTA
TAGTGAATATCATCAAGGTTGTCATCAACTGATCCGTGAAGGTGCTATTTTAGTCGATCATCCTGAACAAATCATCGAAG
ATTTAGCCTTACCTACCCAATGGCTATGTAAAAATACAGAGAAAACACAACAAATAGAAAAATTACCTGAACTCCCTGAA
CATCTTTTTCAGCTCTATCAACACCTCGACTGGGTTGGGCAAGAGATTGATATCCTTCATCAAAAAACAGGTTTAGAGAT
TGCGGCATTAACAGGTTATCTGATGGAATTAGAACTTTTAGGCTTATGTATTCAGCAATCTGGTTTGTACTTACGTTGCC
GAGCAAGTCATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A2S2FH57

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

64.362

99.735

0.642

  dprA Acinetobacter baumannii D1279779

63.83

99.735

0.637

  dprA Acinetobacter baylyi ADP1

59.58

100

0.602


Multiple sequence alignment