Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   DJ533_RS17865 Genome accession   NZ_CP029397
Coordinates   3209559..3210710 (+) Length   383 a.a.
NCBI ID   WP_065994476.1    Uniprot ID   -
Organism   Acinetobacter defluvii strain WCHA30     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3204559..3215710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DJ533_RS17845 (DJ533_17885) - 3204882..3206090 (+) 1209 WP_065994472.1 oxygenase MpaB family protein -
  DJ533_RS17850 (DJ533_17890) - 3206203..3208302 (-) 2100 WP_065994473.1 TonB-dependent copper receptor -
  DJ533_RS17855 (DJ533_17895) - 3208373..3208813 (-) 441 WP_065994474.1 DUF2946 family protein -
  DJ533_RS17860 (DJ533_17900) def 3208906..3209436 (-) 531 WP_065994475.1 peptide deformylase -
  DJ533_RS17865 (DJ533_17905) tsaP 3209559..3210710 (+) 1152 WP_065994476.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  DJ533_RS17870 (DJ533_17910) dprA 3210744..3211877 (+) 1134 WP_065994477.1 DNA-processing protein DprA Machinery gene
  DJ533_RS17875 (DJ533_17915) - 3211919..3212488 (+) 570 WP_065994478.1 L-threonylcarbamoyladenylate synthase -
  DJ533_RS17885 (DJ533_17925) - 3213263..3214177 (-) 915 WP_065994479.1 DMT family transporter -
  DJ533_RS17890 (DJ533_17930) - 3214580..3215332 (+) 753 WP_089024794.1 AraC family transcriptional regulator -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 41260.12 Da        Isoelectric Point: 7.8338

>NTDB_id=292245 DJ533_RS17865 WP_065994476.1 3209559..3210710(+) (tsaP) [Acinetobacter defluvii strain WCHA30]
MINFFNGINISATGFKKQVLAMALCLSAGIAVVDVAHAAPSPNQNPPSLKANAPHVYVVKRGDTLWDIAGRFLSKPWRWP
EIWASNRHVKNPHWIYPGDKLLLCSLNGRPLIGVDEGDGCDGIIRRHQGGTSLRPQVRVEAIGNTIPIISSADIKPWLEH
SIIVSPESLTGVPYIIGAADNRVITGAGQTVYARGNGLVVGQRYGVYRQAEPYIFVDANGKKYNAGQELSEVASAVAVAG
ENEVTTLELTDSYNAEVRSGDYVLPVYDAGLPLIFYPTAQNEVLAGGKIVRVQGSIGTAAVHGVVTVDRGNIDGTKAGQV
FSIYQQGETVRDPKTKELVKLPNQNVGTLMIFKTFDRFSYAYVLDSALPIKVGALIQTPAIAE

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=292245 DJ533_RS17865 WP_065994476.1 3209559..3210710(+) (tsaP) [Acinetobacter defluvii strain WCHA30]
ATGATAAATTTTTTCAATGGCATCAATATTAGTGCCACGGGGTTTAAAAAGCAGGTTCTGGCTATGGCACTCTGCCTGAG
TGCAGGAATCGCTGTAGTGGACGTTGCACATGCGGCACCAAGTCCAAATCAGAATCCACCCTCACTCAAAGCCAATGCAC
CACATGTTTATGTGGTAAAACGTGGTGATACTTTGTGGGATATCGCAGGACGTTTCCTGAGTAAACCATGGCGTTGGCCA
GAAATTTGGGCAAGTAACCGCCATGTGAAAAACCCGCATTGGATTTATCCAGGTGATAAATTATTGCTTTGTAGCTTAAA
CGGTCGACCTTTAATTGGGGTGGATGAAGGTGATGGCTGTGATGGGATTATTCGCCGTCATCAAGGTGGTACGTCATTGC
GCCCACAAGTGCGTGTTGAAGCGATTGGCAATACCATTCCTATCATTTCAAGTGCAGACATTAAACCTTGGTTAGAACAC
AGCATTATTGTGTCACCAGAATCATTAACAGGTGTGCCTTATATTATCGGTGCGGCAGATAATCGTGTGATTACAGGCGC
CGGTCAGACGGTGTATGCTCGTGGTAATGGTCTAGTGGTCGGTCAACGTTACGGTGTCTATCGCCAAGCTGAACCTTATA
TTTTTGTCGATGCAAATGGCAAAAAATATAACGCAGGTCAAGAACTTAGTGAAGTGGCTTCTGCAGTTGCCGTTGCTGGT
GAGAACGAGGTGACCACTTTAGAGCTCACAGACAGTTACAATGCTGAAGTGCGTAGTGGGGACTATGTTCTGCCAGTATA
TGACGCTGGTTTACCTTTGATTTTCTATCCAACTGCACAGAATGAAGTCCTTGCAGGTGGTAAAATTGTCCGTGTCCAAG
GTTCGATTGGTACAGCAGCCGTACATGGTGTTGTAACAGTGGACCGTGGAAATATTGATGGGACAAAGGCAGGTCAGGTA
TTTAGTATTTACCAACAAGGTGAAACTGTACGTGATCCAAAAACCAAAGAGTTGGTTAAATTACCAAACCAAAATGTAGG
TACCTTGATGATTTTCAAGACCTTTGATCGTTTTAGTTATGCCTACGTTCTTGATAGTGCATTACCGATCAAAGTCGGTG
CTTTAATTCAAACACCTGCGATTGCGGAATAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(57-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

62.857

100

0.632

Multiple sequence alignment