Detailed information
Bioinformatically predicted
Overview
| Name | comE | Type | Machinery gene |
| Locus tag | DJ533_RS17230 | Genome accession | NZ_CP029397 |
| Coordinates | 3081874..3082386 (-) | Length | 170 a.a. |
| NCBI ID | WP_065993758.1 | Uniprot ID | A0A2S2FGT3 |
| Organism | Acinetobacter defluvii strain WCHA30 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3076874..3087386
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DJ533_RS17200 (DJ533_17240) | - | 3078055..3079023 (+) | 969 | WP_065993752.1 | triacylglycerol lipase | - |
| DJ533_RS17205 (DJ533_17245) | rplS | 3079088..3079459 (-) | 372 | WP_065993753.1 | 50S ribosomal protein L19 | - |
| DJ533_RS17210 (DJ533_17250) | trmD | 3079674..3080414 (-) | 741 | WP_065993754.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| DJ533_RS17215 (DJ533_17255) | rimM | 3080468..3081016 (-) | 549 | WP_065993755.1 | ribosome maturation factor RimM | - |
| DJ533_RS17220 (DJ533_17260) | rpsP | 3081045..3081302 (-) | 258 | WP_065993756.1 | 30S ribosomal protein S16 | - |
| DJ533_RS17225 (DJ533_17265) | pilE | 3081449..3081871 (-) | 423 | WP_323809364.1 | type IV pilin protein | Machinery gene |
| DJ533_RS17230 (DJ533_17270) | comE | 3081874..3082386 (-) | 513 | WP_065993758.1 | type IV pilin protein | Machinery gene |
| DJ533_RS17235 (DJ533_17275) | - | 3082388..3086323 (-) | 3936 | WP_065993759.1 | hypothetical protein | - |
| DJ533_RS17240 (DJ533_17280) | - | 3086335..3087090 (-) | 756 | WP_065993760.1 | PilX N-terminal domain-containing pilus assembly protein | - |
Sequence
Protein
Download Length: 170 a.a. Molecular weight: 19224.77 Da Isoelectric Point: 6.2272
>NTDB_id=292241 DJ533_RS17230 WP_065993758.1 3081874..3082386(-) (comE) [Acinetobacter defluvii strain WCHA30]
MKNDSVVKTYQIRFNQGFTLIELMVVVVIISILAAIAIPSYQHFVRRAHVAQAQQEMQKIAEQLERYKARNFSFKGFNAS
YLYPSNSVFDVLSQTLNLNSKYTITLVDSMDGNLLLTDKSSSGQGWSIKAISEDTTNYSLLLTSRGMHCKNITQENIDYD
SCGTEGSEEW
MKNDSVVKTYQIRFNQGFTLIELMVVVVIISILAAIAIPSYQHFVRRAHVAQAQQEMQKIAEQLERYKARNFSFKGFNAS
YLYPSNSVFDVLSQTLNLNSKYTITLVDSMDGNLLLTDKSSSGQGWSIKAISEDTTNYSLLLTSRGMHCKNITQENIDYD
SCGTEGSEEW
Nucleotide
Download Length: 513 bp
>NTDB_id=292241 DJ533_RS17230 WP_065993758.1 3081874..3082386(-) (comE) [Acinetobacter defluvii strain WCHA30]
ATGAAAAATGATTCTGTTGTAAAAACTTATCAAATTAGATTCAATCAAGGTTTTACCTTGATTGAACTCATGGTTGTAGT
TGTCATTATTTCCATTTTGGCAGCTATTGCGATCCCAAGTTATCAACATTTTGTAAGGCGAGCACATGTTGCCCAAGCAC
AACAAGAAATGCAGAAAATTGCAGAGCAATTAGAGCGTTATAAGGCTCGGAATTTTAGTTTTAAAGGGTTTAATGCAAGT
TATCTATATCCGAGTAACTCTGTATTTGATGTTTTATCACAAACTTTAAATTTAAACTCAAAATATACGATTACTTTAGT
GGATAGTATGGATGGAAATTTACTGTTGACGGATAAGTCTTCAAGTGGGCAAGGCTGGTCGATTAAAGCGATTAGCGAAG
ATACTACTAATTATTCCTTATTATTAACAAGCAGAGGTATGCATTGTAAAAATATAACGCAAGAAAATATTGATTATGAC
TCTTGCGGGACAGAAGGTTCTGAGGAGTGGTAA
ATGAAAAATGATTCTGTTGTAAAAACTTATCAAATTAGATTCAATCAAGGTTTTACCTTGATTGAACTCATGGTTGTAGT
TGTCATTATTTCCATTTTGGCAGCTATTGCGATCCCAAGTTATCAACATTTTGTAAGGCGAGCACATGTTGCCCAAGCAC
AACAAGAAATGCAGAAAATTGCAGAGCAATTAGAGCGTTATAAGGCTCGGAATTTTAGTTTTAAAGGGTTTAATGCAAGT
TATCTATATCCGAGTAACTCTGTATTTGATGTTTTATCACAAACTTTAAATTTAAACTCAAAATATACGATTACTTTAGT
GGATAGTATGGATGGAAATTTACTGTTGACGGATAAGTCTTCAAGTGGGCAAGGCTGGTCGATTAAAGCGATTAGCGAAG
ATACTACTAATTATTCCTTATTATTAACAAGCAGAGGTATGCATTGTAAAAATATAACGCAAGAAAATATTGATTATGAC
TCTTGCGGGACAGAAGGTTCTGAGGAGTGGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comE | Acinetobacter baylyi ADP1 |
60 |
97.059 |
0.582 |
| pilY2 | Acinetobacter baumannii D1279779 |
42.353 |
100 |
0.424 |