Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   DJ533_RS17225 Genome accession   NZ_CP029397
Coordinates   3081449..3081871 (-) Length   140 a.a.
NCBI ID   WP_323809364.1    Uniprot ID   -
Organism   Acinetobacter defluvii strain WCHA30     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3076449..3086871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DJ533_RS17195 (DJ533_17235) - 3076523..3077557 (+) 1035 WP_065993751.1 lipase secretion chaperone -
  DJ533_RS17200 (DJ533_17240) - 3078055..3079023 (+) 969 WP_065993752.1 triacylglycerol lipase -
  DJ533_RS17205 (DJ533_17245) rplS 3079088..3079459 (-) 372 WP_065993753.1 50S ribosomal protein L19 -
  DJ533_RS17210 (DJ533_17250) trmD 3079674..3080414 (-) 741 WP_065993754.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  DJ533_RS17215 (DJ533_17255) rimM 3080468..3081016 (-) 549 WP_065993755.1 ribosome maturation factor RimM -
  DJ533_RS17220 (DJ533_17260) rpsP 3081045..3081302 (-) 258 WP_065993756.1 30S ribosomal protein S16 -
  DJ533_RS17225 (DJ533_17265) pilE 3081449..3081871 (-) 423 WP_323809364.1 type IV pilin protein Machinery gene
  DJ533_RS17230 (DJ533_17270) comE 3081874..3082386 (-) 513 WP_065993758.1 type IV pilin protein Machinery gene
  DJ533_RS17235 (DJ533_17275) - 3082388..3086323 (-) 3936 WP_065993759.1 hypothetical protein -

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 14972.04 Da        Isoelectric Point: 9.3389

>NTDB_id=292240 DJ533_RS17225 WP_323809364.1 3081449..3081871(-) (pilE) [Acinetobacter defluvii strain WCHA30]
MKKTGFTLIELLIVVAIIAILAAIAYPSYTNYKVRVNRTDAQAEMMTIAHMLSQYKVTNGNYTNATLAQIYGGSVTPSHG
QALYDLTLVAAASTWTLTATPKTSTVQSGNGSISLDSQGQKCWTKGTSCTPTATSNWDGR

Nucleotide


Download         Length: 423 bp        

>NTDB_id=292240 DJ533_RS17225 WP_323809364.1 3081449..3081871(-) (pilE) [Acinetobacter defluvii strain WCHA30]
GTGAAAAAAACAGGATTTACGCTTATAGAGTTGCTGATCGTGGTTGCGATAATAGCAATCTTAGCTGCAATAGCATATCC
GTCTTATACAAACTATAAAGTTCGTGTGAATAGAACGGATGCACAAGCTGAAATGATGACTATAGCGCATATGCTAAGTC
AATATAAAGTGACAAATGGAAATTATACAAATGCAACTTTAGCACAAATTTATGGTGGATCAGTAACTCCCAGTCATGGG
CAGGCTTTGTATGATTTAACTTTGGTTGCTGCTGCATCAACATGGACATTAACAGCTACCCCGAAAACTAGTACAGTGCA
ATCAGGTAATGGTTCAATTAGTTTAGACAGTCAAGGTCAAAAATGTTGGACCAAAGGCACTTCATGCACTCCAACCGCTA
CCTCAAACTGGGATGGCAGATAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(27-107)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

54.348

98.571

0.536
  comF Acinetobacter baylyi ADP1

51.773

100

0.521
  pilA2 Legionella pneumophila str. Paris

35.664

100

0.364

Multiple sequence alignment