Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DJ533_RS03630 Genome accession   NZ_CP029397
Coordinates   269247..269861 (+) Length   204 a.a.
NCBI ID   WP_065993284.1    Uniprot ID   A0A2S2FA10
Organism   Acinetobacter defluvii strain WCHA30     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 264247..274861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DJ533_RS03615 (DJ533_03625) tenA 265712..266386 (-) 675 WP_065993281.1 thiaminase II -
  DJ533_RS03620 (DJ533_03630) - 266611..267693 (+) 1083 WP_065993282.1 DUF475 domain-containing protein -
  DJ533_RS03625 (DJ533_03635) - 267831..269195 (+) 1365 WP_065993283.1 MFS transporter -
  DJ533_RS03630 (DJ533_03640) ssb 269247..269861 (+) 615 WP_065993284.1 single-stranded DNA-binding protein Machinery gene
  DJ533_RS03635 (DJ533_03645) - 269930..270394 (-) 465 WP_065993285.1 hotdog fold domain-containing protein -
  DJ533_RS03640 (DJ533_03650) - 270515..271138 (+) 624 WP_065993286.1 TetR/AcrR family transcriptional regulator -
  DJ533_RS03645 (DJ533_03655) ahpC 271282..271845 (+) 564 WP_065993287.1 alkyl hydroperoxide reductase subunit C -
  DJ533_RS03650 (DJ533_03660) - 271930..272856 (-) 927 WP_065993288.1 LysR substrate-binding domain-containing protein -
  DJ533_RS03655 (DJ533_03665) ycaC 272966..273601 (-) 636 WP_065993289.1 isochorismate family cysteine hydrolase YcaC -
  DJ533_RS03660 (DJ533_03670) - 273898..274773 (+) 876 WP_065993290.1 pirin family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22392.09 Da        Isoelectric Point: 6.4829

>NTDB_id=292209 DJ533_RS03630 WP_065993284.1 269247..269861(+) (ssb) [Acinetobacter defluvii strain WCHA30]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSESWTDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDSRQQSEQGQGFGGDSGGYAQPRFNNNNQQGGFNNNQGGYGNQSNQGSYGNQ
GNSNQGNYGNAGNNVNQGFQSPKPAAPAATPAQAPADLDDDLPF

Nucleotide


Download         Length: 615 bp        

>NTDB_id=292209 DJ533_RS03630 WP_065993284.1 269247..269861(+) (ssb) [Acinetobacter defluvii strain WCHA30]
ATGCGTGGTGTAAATAAAGTCATTTTAGTGGGTACATTAGGTCGTGATCCTGAAACCAAAACTTTCCCAAATGGGGGTTC
TCTGACTCAGTTTTCAATTGCGACAAGCGAATCGTGGACAGATAAAAATACGGGCGAAAGAAAAGAACAAACAGAATGGC
ACCGTATCGTATTGCACAACCGTTTAGGTGAAATTGCACAGCAATATTTACGTAAAGGTTCAAAAGTTTATATCGAAGGT
TCATTGCGTACTCGTCAATGGACAGACCAAAATGGTCAAGAGCGTTATACAACTGAAATCCGTGGCGAACAAATGCAGAT
GCTTGACTCACGTCAACAAAGTGAACAAGGTCAAGGCTTTGGTGGTGATAGCGGCGGTTATGCGCAACCACGTTTTAATA
ACAATAATCAGCAAGGTGGGTTTAATAATAACCAAGGCGGTTATGGTAATCAGAGCAATCAAGGTAGCTACGGTAATCAA
GGCAATAGCAACCAAGGTAACTATGGCAATGCAGGCAACAATGTAAACCAAGGTTTCCAATCCCCTAAACCAGCAGCACC
TGCTGCGACACCTGCACAAGCACCTGCTGATTTAGATGATGACCTTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S2FA10

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.485

100

0.51
  ssb Vibrio cholerae strain A1552

42.995

100

0.436
  ssb Neisseria gonorrhoeae MS11

36.538

100

0.373
  ssb Neisseria meningitidis MC58

36.765

100

0.368

Multiple sequence alignment