Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | HME7025_RS01320 | Genome accession | NZ_CP029346 |
| Coordinates | 302506..302970 (+) | Length | 154 a.a. |
| NCBI ID | WP_109321912.1 | Uniprot ID | A0A2S2DRX4 |
| Organism | Aquirufa nivalisilvae strain HME7025 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 297506..307970
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HME7025_RS01300 (HME7025_00256) | - | 298160..299716 (-) | 1557 | WP_109321909.1 | Rne/Rng family ribonuclease | - |
| HME7025_RS01305 (HME7025_00257) | - | 299997..300863 (-) | 867 | WP_109321910.1 | lipopolysaccharide assembly protein LapB | - |
| HME7025_RS01310 (HME7025_00258) | - | 300889..301182 (-) | 294 | WP_109321911.1 | HU family DNA-binding protein | - |
| HME7025_RS01315 (HME7025_00259) | mutY | 301359..302456 (+) | 1098 | WP_109324896.1 | A/G-specific adenine glycosylase | - |
| HME7025_RS01320 (HME7025_00260) | ssb | 302506..302970 (+) | 465 | WP_109321912.1 | single-stranded DNA-binding protein | Machinery gene |
| HME7025_RS01325 (HME7025_00261) | gldE | 303047..304405 (+) | 1359 | WP_109321913.1 | gliding motility-associated protein GldE | - |
| HME7025_RS01330 (HME7025_00262) | - | 304389..305345 (+) | 957 | WP_109321914.1 | hypothetical protein | - |
| HME7025_RS01335 (HME7025_00263) | - | 305342..306283 (+) | 942 | WP_109321915.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 154 a.a. Molecular weight: 16839.67 Da Isoelectric Point: 5.0100
>NTDB_id=291823 HME7025_RS01320 WP_109321912.1 302506..302970(+) (ssb) [Aquirufa nivalisilvae strain HME7025]
MAGVNKVILLGNLGGDPEVRALPSGIKVANINIATSESYPGKDGQRVEQTEWHRVELWDNLANIAEQYLRKGNQVYIEGK
IRSEEWQDKNGATVRGYRIRATSINLIGGRNDRPANEASDARPRPEALPTADKSASPSPNFPTLADSGDDDLPF
MAGVNKVILLGNLGGDPEVRALPSGIKVANINIATSESYPGKDGQRVEQTEWHRVELWDNLANIAEQYLRKGNQVYIEGK
IRSEEWQDKNGATVRGYRIRATSINLIGGRNDRPANEASDARPRPEALPTADKSASPSPNFPTLADSGDDDLPF
Nucleotide
Download Length: 465 bp
>NTDB_id=291823 HME7025_RS01320 WP_109321912.1 302506..302970(+) (ssb) [Aquirufa nivalisilvae strain HME7025]
ATGGCAGGAGTAAACAAAGTAATTTTATTAGGCAATTTGGGGGGAGACCCAGAAGTGAGAGCCTTACCTAGTGGTATTAA
GGTAGCGAATATTAATATAGCTACTTCCGAATCCTATCCAGGAAAAGATGGGCAACGGGTGGAGCAAACGGAATGGCACC
GTGTAGAGCTATGGGATAATTTAGCCAACATTGCAGAGCAATATTTGCGAAAAGGAAATCAAGTGTATATCGAGGGGAAA
ATTCGTTCAGAAGAATGGCAAGATAAAAATGGGGCTACGGTGCGTGGTTACCGGATTCGCGCTACCTCCATTAACTTGAT
TGGTGGTAGAAATGATCGTCCTGCCAATGAAGCGTCAGATGCTCGACCTCGACCTGAAGCATTGCCAACGGCCGACAAAT
CAGCTTCGCCTTCTCCGAATTTTCCAACATTAGCAGATTCTGGAGATGATGATCTCCCATTTTAA
ATGGCAGGAGTAAACAAAGTAATTTTATTAGGCAATTTGGGGGGAGACCCAGAAGTGAGAGCCTTACCTAGTGGTATTAA
GGTAGCGAATATTAATATAGCTACTTCCGAATCCTATCCAGGAAAAGATGGGCAACGGGTGGAGCAAACGGAATGGCACC
GTGTAGAGCTATGGGATAATTTAGCCAACATTGCAGAGCAATATTTGCGAAAAGGAAATCAAGTGTATATCGAGGGGAAA
ATTCGTTCAGAAGAATGGCAAGATAAAAATGGGGCTACGGTGCGTGGTTACCGGATTCGCGCTACCTCCATTAACTTGAT
TGGTGGTAGAAATGATCGTCCTGCCAATGAAGCGTCAGATGCTCGACCTCGACCTGAAGCATTGCCAACGGCCGACAAAT
CAGCTTCGCCTTCTCCGAATTTTCCAACATTAGCAGATTCTGGAGATGATGATCTCCCATTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
42.135 |
100 |
0.487 |
| ssb | Neisseria meningitidis MC58 |
41.954 |
100 |
0.474 |
| ssb | Neisseria gonorrhoeae MS11 |
41.379 |
100 |
0.468 |
| ssb | Glaesserella parasuis strain SC1401 |
37.234 |
100 |
0.455 |