Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DIE29_RS02405 Genome accession   NZ_CP029331
Coordinates   502691..503164 (+) Length   157 a.a.
NCBI ID   WP_102040871.1    Uniprot ID   -
Organism   Pseudothauera hydrothermalis strain GD-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 497691..508164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DIE29_RS02390 - 498001..498303 (-) 303 WP_114649083.1 hypothetical protein -
  DIE29_RS02395 uvrA 498396..501230 (-) 2835 WP_114649084.1 excinuclease ABC subunit UvrA -
  DIE29_RS02400 - 501348..502565 (+) 1218 WP_237269495.1 MFS transporter -
  DIE29_RS02405 ssb 502691..503164 (+) 474 WP_102040871.1 single-stranded DNA-binding protein Machinery gene
  DIE29_RS14970 - 503230..503361 (+) 132 WP_418333166.1 hypothetical protein -
  DIE29_RS02415 - 503341..504495 (-) 1155 WP_114649087.1 MalY/PatB family protein -
  DIE29_RS02420 - 504663..504950 (-) 288 WP_114649088.1 pseudouridine synthase -
  DIE29_RS02425 - 504971..505375 (-) 405 WP_114649089.1 GPW/gp25 family protein -
  DIE29_RS02430 - 505379..506434 (-) 1056 WP_114649090.1 phage late control D family protein -
  DIE29_RS02435 - 506434..506640 (-) 207 WP_114649091.1 tail protein X -
  DIE29_RS02440 - 506637..507062 (-) 426 WP_205409765.1 phage tail protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17577.62 Da        Isoelectric Point: 5.8303

>NTDB_id=291713 DIE29_RS02405 WP_102040871.1 502691..503164(+) (ssb) [Pseudothauera hydrothermalis strain GD-2]
MASLNKVILIGNLGRDPETRYMPSGDAICNVTIATTETWKDKASGERREATEWHRVVFFGRLAEIAAQYLRKGSQVYIEG
RLQTRKWQDKDGQDRYTTEIRADEMKMLGRREGGDAPMRDGGSYDAPPARPDHTPTPAPQSKPASGGFGEFEDDIPF

Nucleotide


Download         Length: 474 bp        

>NTDB_id=291713 DIE29_RS02405 WP_102040871.1 502691..503164(+) (ssb) [Pseudothauera hydrothermalis strain GD-2]
ATGGCCTCCCTGAACAAAGTCATTTTGATCGGCAATCTGGGGCGTGACCCCGAAACCCGCTACATGCCCAGCGGCGACGC
GATCTGCAACGTCACCATTGCCACCACCGAGACCTGGAAAGACAAAGCCAGCGGTGAGCGGCGCGAGGCCACCGAATGGC
ACCGCGTGGTGTTTTTCGGCCGCTTGGCCGAGATTGCCGCCCAATACCTGCGCAAGGGCAGCCAGGTCTACATCGAAGGC
CGCTTGCAGACCCGCAAGTGGCAAGACAAAGACGGCCAGGACCGCTACACCACCGAGATCCGCGCCGACGAGATGAAAAT
GCTCGGCCGCCGCGAAGGCGGCGATGCGCCAATGCGCGACGGCGGCAGCTACGACGCTCCGCCTGCGCGGCCGGATCACA
CGCCCACGCCCGCACCGCAGAGCAAGCCGGCCAGCGGCGGTTTTGGTGAATTTGAAGACGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.802

100

0.618
  ssb Glaesserella parasuis strain SC1401

49.444

100

0.567
  ssb Neisseria meningitidis MC58

49.425

100

0.548
  ssb Neisseria gonorrhoeae MS11

49.425

100

0.548

Multiple sequence alignment