Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DGM93_RS16430 Genome accession   NZ_CP029277
Coordinates   3833562..3834620 (-) Length   352 a.a.
NCBI ID   WP_011348458.1    Uniprot ID   -
Organism   Xanthomonas phaseoli pv. phaseoli strain PR1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3828562..3839620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DGM93_RS16410 (DGM93_17260) - 3829664..3831568 (-) 1905 WP_039587978.1 type IV pilus secretin PilQ family protein -
  DGM93_RS16415 (DGM93_17265) - 3831588..3832121 (-) 534 WP_007974439.1 pilus assembly protein PilP -
  DGM93_RS16420 (DGM93_17270) - 3832118..3832783 (-) 666 WP_039572047.1 type 4a pilus biogenesis protein PilO -
  DGM93_RS16425 (DGM93_17275) - 3832780..3833562 (-) 783 WP_017156874.1 PilN domain-containing protein -
  DGM93_RS16430 (DGM93_17280) comM 3833562..3834620 (-) 1059 WP_011348458.1 pilus assembly protein PilM Machinery gene
  DGM93_RS16435 (DGM93_17285) - 3834833..3837259 (+) 2427 WP_033473311.1 penicillin-binding protein 1A -
  DGM93_RS16440 (DGM93_17290) - 3837578..3838228 (+) 651 WP_017156871.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37606.21 Da        Isoelectric Point: 4.3924

>NTDB_id=291578 DGM93_RS16430 WP_011348458.1 3833562..3834620(-) (comM) [Xanthomonas phaseoli pv. phaseoli strain PR1]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDLEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLTAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALARLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHALALDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=291578 DGM93_RS16430 WP_011348458.1 3833562..3834620(-) (comM) [Xanthomonas phaseoli pv. phaseoli strain PR1]
GTGGGGCTTTTACCCAAGAGTCAGTCGCCACTGATTGGTGTCGACATTAGTTCTACTGCCGTGAAGCTCTTGCAGCTATC
GCGCAGCGGGAACCGTTTTCGCGTGGAACATTACGCGGTGGAACCATTGCCGCCGAATGCGGTCGTGGAAAAGAACATCG
TCGAAGTGGAGGCGGTGGGCGAAGCCATTCGCCGCGCCATCAACCGTTCCGGCAGCAAGGCCAAGAACGCGGCAGCTGCT
GTAGCCGGGTCGGCGGTGATCACCAAGTTGATCCCGATGCCGGCCGATCTGGACGATAGCGACCTGGAAGCCCAGGTCGA
ACTGGAAGCCACCAATTACATTCCGTATCCGATCGAGGAAGTAAATCTCGATTTCGAGGTGCTGGGCCCGATGCCCAACA
GCCCGGACATGGTGCAGGTGCTGCTGGCCGCCTCGCGTTCGGAGAACGTGGAACTGCGCCAGTCGGCGCTGGAACTCGGT
GGCTTGACCGCCAAGGTGATGGACGTGGAGGCCTTTGCGGTCGAAAACGCCTTCGCACTGGTTGCCAGCGAATTGCCGGT
GGCCGCCGATGCGGTGGTGGCGCTGGTGGATATCGGCGCGACCATGACCACACTGAGCGTGCTGCGCTCCGGCCGCAGTC
TGTATAGCCGCGAGCAGGTGTTCGGCGGCAAGCAGCTCACCGACGAAGTGATGCGCCGTTACGGGCTGACCTATGAAGAG
GCTGGCCTTGCCAAGCGTCAGGGCGGCCTGCCGGAAAGCTACGAGGTCGAGGTGCTGGAGCCGTTCAAGGAAGCCACGGT
GCAGCAGATCAGCCGTCTGCTGCAGTTCTTCTATGCGGGCAGTGAATTTAACCGCGTCGATTGCATCGTGCTGGCCGGCG
GTTGCGCTGCGCTGGCGCGCCTGCCGGAGATGGTGGAAGAGCAACTGGGCGTGACCACGGTCGTTGCAAATCCGCTTGCC
CAGATGACGCTTGGCCCGAAAGTCCAGGCCCATGCGCTGGCGCTGGATGCGCCTGCTTTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter baylyi ADP1

51.282

99.716

0.511
  comM Acinetobacter nosocomialis M2

51.136

100

0.511
  pilM Acinetobacter baumannii D1279779

50.852

100

0.509
  pilM Legionella pneumophila strain ERS1305867

47.293

99.716

0.472

Multiple sequence alignment