Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DGM93_RS14055 Genome accession   NZ_CP029277
Coordinates   3266407..3266934 (-) Length   175 a.a.
NCBI ID   WP_099770622.1    Uniprot ID   A0A3T0G0H7
Organism   Xanthomonas phaseoli pv. phaseoli strain PR1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3261407..3271934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DGM93_RS14040 (DGM93_14745) paoA 3262285..3262935 (-) 651 WP_039570484.1 aldehyde dehydrogenase iron-sulfur subunit PaoA -
  DGM93_RS14045 (DGM93_14750) - 3263344..3264351 (-) 1008 WP_039570482.1 NAD(P)-dependent alcohol dehydrogenase -
  DGM93_RS14050 (DGM93_14755) - 3264575..3266122 (+) 1548 WP_180301663.1 sensor domain-containing diguanylate cyclase -
  DGM93_RS14055 (DGM93_14760) ssb 3266407..3266934 (-) 528 WP_099770622.1 single-stranded DNA-binding protein Machinery gene
  DGM93_RS14060 (DGM93_14765) - 3267210..3268208 (+) 999 WP_017157215.1 polyprenyl synthetase family protein -
  DGM93_RS14065 (DGM93_14770) - 3268411..3269211 (-) 801 WP_039573859.1 dienelactone hydrolase family protein -
  DGM93_RS14070 (DGM93_14775) murD 3269524..3270930 (-) 1407 WP_039573857.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18800.64 Da        Isoelectric Point: 5.3095

>NTDB_id=291569 DGM93_RS14055 WP_099770622.1 3266407..3266934(-) (ssb) [Xanthomonas phaseoli pv. phaseoli strain PR1]
MARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDRDGNNQERTEWHRVVFFGKLGEIAGEYLRKGSQVYVEG
ELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGGGGMGGDRPQRSASRQQGGGGGQGGGYGGGGQDYAPRRQQPAQQQ
SAPPMDDFADDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=291569 DGM93_RS14055 WP_099770622.1 3266407..3266934(-) (ssb) [Xanthomonas phaseoli pv. phaseoli strain PR1]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGATACCAAATACACCCAGGCCGGCAT
GGCAATCACGCGCGTGAGCCTGGCCACCACCAGCATGCGCAAGGACCGCGACGGCAATAACCAGGAACGTACCGAGTGGC
ACCGCGTGGTGTTTTTCGGAAAGCTGGGCGAAATTGCCGGCGAATACCTGCGCAAGGGGTCGCAGGTCTATGTCGAAGGC
GAACTGCGCTACGACAAGTACACCGGCCAGGACGGCGTGGAGAAGTACAGCACCGACATCGTCGCCAACGAGATGCAGAT
GCTCGGCGGCCGTGGTGAAGGCGGCGGGGGCGGGATGGGCGGCGATCGCCCGCAGCGCTCGGCATCGCGTCAGCAGGGCG
GCGGCGGTGGGCAGGGCGGTGGATACGGTGGCGGTGGGCAGGACTATGCGCCGCGCCGTCAGCAGCCGGCCCAGCAACAG
TCGGCACCGCCGATGGACGATTTCGCCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3T0G0H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

44.33

100

0.491
  ssb Glaesserella parasuis strain SC1401

45.902

100

0.48
  ssb Neisseria meningitidis MC58

42.391

100

0.446
  ssb Neisseria gonorrhoeae MS11

42.391

100

0.446

Multiple sequence alignment