Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ECHS_RS21180 Genome accession   NC_009800
Coordinates   4305890..4306426 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli HS     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4300890..4311426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECHS_RS25240 (EcHS_A4296) aphA 4301178..4301892 (+) 715 Protein_4052 acid phosphatase AphA -
  ECHS_RS21165 (EcHS_A4298) yjbQ 4302003..4302419 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  ECHS_RS21170 (EcHS_A4299) yjbR 4302423..4302779 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  ECHS_RS21175 (EcHS_A4300) uvrA 4302814..4305636 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  ECHS_RS21180 (EcHS_A4301) ssb 4305890..4306426 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  ECHS_RS21185 (EcHS_A4302) yjcB 4306525..4306806 (-) 282 WP_001295689.1 YjcB family protein -
  ECHS_RS21190 (EcHS_A4303) pdeC 4307236..4308822 (+) 1587 WP_000019535.1 c-di-GMP phosphodiesterase PdeC -
  ECHS_RS21195 (EcHS_A4304) soxS 4308825..4309148 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  ECHS_RS21200 (EcHS_A4305) soxR 4309234..4309698 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=29152 ECHS_RS21180 WP_000168305.1 4305890..4306426(+) (ssb) [Escherichia coli HS]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=29152 ECHS_RS21180 WP_000168305.1 4305890..4306426(+) (ssb) [Escherichia coli HS]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489

Multiple sequence alignment