Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DGN21_RS13515 Genome accession   NZ_CP029263
Coordinates   3212375..3212896 (-) Length   173 a.a.
NCBI ID   WP_024939378.1    Uniprot ID   A0AB73GUR8
Organism   Xanthomonas sp. MLO165     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3207375..3217896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DGN21_RS13500 (DGN21_13785) paoA 3208078..3208728 (-) 651 WP_024939376.1 aldehyde dehydrogenase iron-sulfur subunit PaoA -
  DGN21_RS13505 (DGN21_13790) - 3209279..3210286 (-) 1008 WP_126965885.1 NAD(P)-dependent alcohol dehydrogenase -
  DGN21_RS13510 (DGN21_13795) - 3210559..3212064 (+) 1506 WP_184429062.1 sensor domain-containing diguanylate cyclase -
  DGN21_RS13515 (DGN21_13800) ssb 3212375..3212896 (-) 522 WP_024939378.1 single-stranded DNA-binding protein Machinery gene
  DGN21_RS13520 (DGN21_13805) - 3213170..3214168 (+) 999 WP_016902370.1 polyprenyl synthetase family protein -
  DGN21_RS13525 (DGN21_13810) - 3214439..3215239 (-) 801 WP_160954509.1 dienelactone hydrolase family protein -
  DGN21_RS13530 (DGN21_13815) murD 3215398..3216807 (-) 1410 WP_126965883.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18732.61 Da        Isoelectric Point: 5.3095

>NTDB_id=291461 DGN21_RS13515 WP_024939378.1 3212375..3212896(-) (ssb) [Xanthomonas sp. MLO165]
MARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDRDGNNQERTEWHRVVFFGKLGEIAGEYLRKGSQVYVEG
ELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGGGGMGGDRPQRSQAPRQQQGGGGGGQGGGQDYAPRRQQPAQQQSA
PPMDDFADDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=291461 DGN21_RS13515 WP_024939378.1 3212375..3212896(-) (ssb) [Xanthomonas sp. MLO165]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGGCCGGCAT
GGCGATCACGCGCGTGAGTCTGGCCACCACCAGCATGCGCAAGGACCGCGATGGCAACAACCAGGAGCGCACCGAGTGGC
ACCGCGTGGTGTTCTTCGGCAAGCTGGGCGAGATCGCCGGCGAGTACCTGCGCAAGGGCTCGCAGGTGTATGTCGAAGGC
GAGCTGCGTTACGACAAGTACACCGGCCAGGACGGCGTGGAGAAGTACAGCACCGACATCGTCGCCAATGAGATGCAGAT
GCTCGGCGGCCGTGGCGAAGGCGGTGGTGGTGGCATGGGCGGCGATCGCCCGCAGCGCAGCCAGGCGCCGCGCCAGCAGC
AAGGTGGTGGCGGTGGTGGTCAGGGCGGCGGTCAGGATTATGCCCCGCGTCGTCAGCAGCCGGCCCAGCAGCAGTCGGCA
CCGCCGATGGACGATTTTGCCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

46.486

100

0.497
  ssb Glaesserella parasuis strain SC1401

45.251

100

0.468
  ssb Neisseria meningitidis MC58

44.944

100

0.462
  ssb Neisseria gonorrhoeae MS11

44.944

100

0.462

Multiple sequence alignment