Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   DG474_RS08145 Genome accession   NZ_CP029257
Coordinates   1690903..1692864 (-) Length   653 a.a.
NCBI ID   WP_255778045.1    Uniprot ID   -
Organism   Streptococcus oralis strain CCUG 53468     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1685903..1697864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DG474_RS08125 (DG474_08255) - 1687130..1687822 (-) 693 WP_255778042.1 tyrosine-protein kinase -
  DG474_RS08130 (DG474_08260) cpsC 1687832..1688524 (-) 693 WP_061415468.1 capsular polysaccharide biosynthesis protein CpsC -
  DG474_RS08135 (DG474_08265) cps4B 1688533..1689264 (-) 732 WP_255778043.1 capsular polysaccharide biosynthesis protein Cps4B -
  DG474_RS08140 (DG474_08270) - 1689266..1690711 (-) 1446 WP_255778044.1 LCP family protein -
  DG474_RS08145 (DG474_08275) amiA3 1690903..1692864 (-) 1962 WP_255778045.1 peptide ABC transporter substrate-binding protein Regulator
  DG474_RS08150 (DG474_08280) amiA 1693013..1694980 (-) 1968 WP_000837392.1 peptide ABC transporter substrate-binding protein Regulator
  DG474_RS08155 (DG474_08285) - 1695696..1696085 (+) 390 Protein_1556 IS3 family transposase -
  DG474_RS08160 (DG474_08290) - 1696146..1697756 (-) 1611 WP_255778046.1 alpha-glucosidase -

Sequence

Protein


Download         Length: 653 a.a.        Molecular weight: 73070.36 Da        Isoelectric Point: 4.8329

>NTDB_id=291434 DG474_RS08145 WP_255778045.1 1690903..1692864(-) (amiA3) [Streptococcus oralis strain CCUG 53468]
MIKMKKRLIGTGLVLATGILLSSCGQSNTDTSTYSSTFSANPTTFNYLLDYYADNTAVITNLVDGLLENDSYGNLVPALA
EDWSVSSDGLIYTYKLRKDAKWYTADGEEYASVKAQDFVTGIKYAADNKGQAMDLIQNSIKGLNDYVTGVTNDFSTVGVK
ALDDYTVEYTLTRPEPYWNSKTTNSILFPVNEEFLKSKDKDFGTLTPDSILYNGPYLLKDFTSKSSIEYVKNPHYYDHDK
VTIEKVKLAYFDGSDQEMTIRNFESGAYSIAGVYPNSSNYAKTKEKYQDNIVYSLQDKTSWYFNFNVNRKTYNHTAKTTD
EQKKSAQTAILNKNFRQAINFGIDRTAYSAQSNGEEAASKTLRNTLVPPTFVQVGDKTFGEVTASKLVNYGTEWSGINLA
DAQDAYFNKEKAQARFAEAKKELEAQGVTFPIHLDVPVDQTNKNAVSGMNSVKQTLETVLGSDNIVIDVQQLSTDDFGNV
AFLAPNPAARDYDLNFDGWVGDYQDPSTYLDPFNAETGFYLKIFGLDAKEDQELIKSLGLDTYTQLLKEADAENKDVAKR
YEKYAEAQAWMIDNSLVMSAMSNGGTASVTKVTPFTRAYSLVGIKGDGNNYKYMRLQKDPVTKKQFDEAKAKWEAESKKA
IEKSQKEFENHVK

Nucleotide


Download         Length: 1962 bp        

>NTDB_id=291434 DG474_RS08145 WP_255778045.1 1690903..1692864(-) (amiA3) [Streptococcus oralis strain CCUG 53468]
ATGATCAAAATGAAAAAAAGACTGATTGGGACAGGTCTTGTCTTAGCGACAGGGATTTTGCTCTCGTCATGTGGACAGTC
CAATACAGATACTAGCACTTATTCATCAACATTTAGTGCGAATCCAACAACTTTTAACTATCTCCTAGATTATTATGCAG
ATAACACTGCCGTTATTACCAATCTTGTAGATGGTTTGCTAGAAAATGACAGCTACGGGAACCTCGTGCCTGCTCTTGCG
GAGGATTGGTCTGTTTCATCAGATGGTTTGATCTATACCTACAAGCTTAGAAAAGATGCCAAGTGGTATACAGCTGACGG
TGAGGAGTATGCTTCAGTCAAAGCTCAGGATTTTGTCACTGGGATCAAATATGCCGCGGACAACAAGGGGCAAGCCATGG
ATCTGATTCAAAATTCAATCAAGGGATTGAATGACTATGTGACGGGTGTGACCAATGACTTTTCAACTGTCGGTGTCAAA
GCCTTGGATGATTACACAGTCGAGTACACCTTGACTCGACCAGAACCGTACTGGAATTCAAAGACAACCAATAGTATTCT
TTTCCCAGTCAACGAAGAGTTCTTGAAATCAAAGGATAAAGATTTTGGTACCTTGACACCAGACAGTATCCTTTATAACG
GCCCCTATCTGTTAAAAGATTTCACATCAAAATCTTCGATTGAATATGTGAAGAATCCACACTATTATGACCATGATAAA
GTAACCATTGAAAAAGTTAAGTTAGCTTACTTTGATGGGTCAGATCAGGAGATGACCATTCGAAACTTTGAAAGTGGTGC
TTACTCGATTGCAGGAGTCTATCCAAATAGTTCGAACTATGCTAAGACAAAAGAAAAATACCAAGACAATATCGTCTATA
GTTTACAAGACAAGACATCTTGGTACTTTAACTTTAACGTCAACCGTAAAACCTATAATCATACCGCTAAAACAACGGAT
GAACAAAAGAAATCAGCTCAAACAGCTATCTTAAATAAAAATTTCCGTCAAGCTATCAACTTTGGTATTGATCGAACAGC
CTACTCTGCTCAATCTAACGGTGAAGAAGCAGCGAGCAAAACCCTTCGTAATACTCTAGTTCCTCCAACATTTGTCCAGG
TGGGAGATAAGACCTTTGGAGAAGTAACAGCTTCTAAGCTTGTGAACTACGGAACTGAGTGGTCAGGTATCAATTTGGCA
GATGCTCAAGATGCCTACTTTAACAAGGAAAAGGCCCAAGCAAGATTTGCGGAAGCTAAAAAGGAATTGGAAGCCCAAGG
CGTGACTTTCCCAATCCATTTGGATGTCCCTGTTGATCAGACGAATAAAAATGCGGTTTCTGGTATGAACTCGGTTAAAC
AAACCCTTGAAACAGTACTAGGTTCTGACAATATCGTCATTGATGTTCAACAGCTTTCTACAGATGACTTTGGGAATGTT
GCCTTCCTAGCACCAAATCCAGCAGCTCGTGACTACGACCTAAACTTTGATGGTTGGGTTGGTGATTACCAGGATCCATC
AACTTATCTAGACCCCTTCAATGCTGAAACAGGCTTCTATCTCAAGATTTTTGGTCTTGATGCCAAGGAAGACCAAGAGC
TCATTAAGAGTTTGGGGCTCGATACCTATACACAACTCCTGAAAGAAGCAGATGCTGAGAATAAAGATGTTGCTAAGCGT
TATGAAAAATACGCTGAAGCGCAAGCTTGGATGATTGACAATTCTCTAGTCATGTCTGCTATGTCAAATGGTGGTACAGC
CTCTGTAACCAAAGTAACTCCGTTTACACGTGCCTACTCCCTAGTAGGTATCAAGGGTGACGGAAATAATTACAAGTACA
TGAGATTACAAAAAGACCCTGTTACCAAGAAACAATTTGACGAAGCCAAGGCTAAGTGGGAAGCAGAAAGTAAAAAGGCT
ATCGAAAAGAGCCAAAAAGAGTTTGAAAACCACGTAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

51.294

100

0.516
  amiA3 Streptococcus thermophilus LMG 18311

51.142

100

0.515
  amiA Streptococcus salivarius strain HSISS4

50.61

100

0.508

Multiple sequence alignment